[Blends-commit] r2796 - in /projects/med/trunk/debian-med/tasks: bio bio-dev

[tille at users.alioth.debian.org]

Author: tille
Date: Fri Apr 29 07:45:07 2011
New Revision: 2796

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=2796
Log:
Squizz and jebl2 now official packages

Modified:
    projects/med/trunk/debian-med/tasks/bio
    projects/med/trunk/debian-med/tasks/bio-dev

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=2796&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Fri Apr 29 07:45:07 2011
@@ -421,6 +421,8 @@
 Depends: mrbayes
 
 Suggests: pdb2pqr
+
+Depends: squizz
 
 Depends: r-other-genabel
 Homepage: http://mga.bionet.nsc.ru/nlru/GenABEL/
@@ -3432,24 +3434,6 @@
  opportunities for building reference sequences and carrying out accurate
  analyses of unexplored genomes in a cost effective way.
 
-Depends: squizz
-License: GPLv2
-Language: C
-Homepage: ftp://ftp.pasteur.fr/pub/gensoft/projects/squizz/
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/squizz/trunk/
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/squizz/trunk/?rev=0&sc=0
-Responsible: Olivier Sallou <olivier.sallou at irisa.fr>
-WNPP: 618689
-Pkg-Description: sequence/alignment format checker
- Squizz is a sequence/alignment format checker, but it has some
- conversion capabilities too.
- .
- Most common sequence and alignment formats are supported:
-  - EMBL, FASTA, GCG, GDE, GENBANK, IG, NBRF, PIR (codata), RAW, and
-    SWISSPROT.
-  - CLUSTAL, FASTA, MEGA, MSF, NEXUS, PHYLIP (interleaved and sequential) and
-    STOCKHOLM.
-
 Depends: metarep
 License: MIT
 Homepage: http://www.jcvi.org/metarep/

Modified: projects/med/trunk/debian-med/tasks/bio-dev
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio-dev?rev=2796&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio-dev (original)
+++ projects/med/trunk/debian-med/tasks/bio-dev Fri Apr 29 07:45:07 2011
@@ -77,6 +77,12 @@
 Depends: seqan-dev
 
 Depends: libbio-mage-utils-perl
+
+Depends: libjebl2-java
+Remark: Fork from jebl
+ This is a branch of the original JEBL on
+ http://sourceforge.net/projects/jebl/ to develop a new API and class
+ library.
 
 Depends: bioconductor
 Homepage: http://www.bioconductor.org/
@@ -199,18 +205,3 @@
  The LibSBML code is very portable and is supported on Linux, Windows
  (native), and Mac OS X.
 
-Depends: libjebl2-java
-License: LGPL
-Homepage: 
-WNPP: 613080
-Homepage: http://code.google.com/p/jebl2/
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/libjebl2-java/trunk/?rev=0&sc=0
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/libjebl2-java/trunk/
-Pkg-Description: Java Evolutionary Biology Library
- A Java library for evolutionary biology and bioinformatics, including
- objects representing biomolecular sequences, multiple sequence
- alignments and phylogenetic trees.
- .
- This is a branch of the original JEBL on
- http://sourceforge.net/projects/jebl/ to develop a new API and class
- library.