[med-svn] [tophat] 02/03: Merge tag 'upstream/2.0.14+dfsg'

[Alex Mestiashvili]

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malex-guest pushed a commit to branch master
in repository tophat.

commit b8c209701e5308102e8ac717b4583b907a77521c
Merge: 06a8ddb 6f808e1
Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
Date:   Wed Mar 25 15:03:39 2015 +0100

    Merge tag 'upstream/2.0.14+dfsg'
    
    Upstream version 2.0.14+dfsg

 Makefile.in            |   493 ++-
 aclocal.m4             |   812 ++--
 ar-lib                 |   270 ++
 config.h.in            |    10 +-
 configure              | 10208 +++++++++++++++++++++++------------------------
 configure.ac           |    10 +-
 src/Makefile.am        |    24 +-
 src/Makefile.in        |   524 ++-
 src/bam_merge_impl.cpp |    29 +-
 src/common.cpp         |    12 +
 src/reads.cpp          |    26 +-
 src/reads.h            |   129 +-
 src/tophat-fusion-post |     2 +-
 src/tophat.py          |    15 +-
 src/tophat_reports.cpp |    37 +-
 15 files changed, 6596 insertions(+), 6005 deletions(-)

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