[med-svn] [Git][med-team/beast-mcmc][master] 11 commits: New upstream version 1.10.2+dfsg

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / beast-mcmc


Commits:
d0aeeeb4 by Andreas Tille at 2018-10-16T18:54:35Z
New upstream version 1.10.2+dfsg
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1ec128dd by Andreas Tille at 2018-12-18T12:59:19Z
Do not try to install mac and windows build

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68747615 by Andreas Tille at 2018-12-18T13:08:35Z
New upstream version 1.10.4+dfsg
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3699b94f by Andreas Tille at 2018-12-18T13:08:51Z
Update upstream source from tag 'upstream/1.10.4+dfsg'

Update to upstream version '1.10.4+dfsg'
with Debian dir eba097574c70a8b072874c6ed3577f17fc157567
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b620d34d by Andreas Tille at 2018-12-18T13:08:51Z
New upstream version

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fbd9d89a by Andreas Tille at 2018-12-18T13:11:08Z
Respect DEB_BUILD_OPTIONS in override_dh_auto_test target

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4d5da9b2 by Andreas Tille at 2018-12-18T13:21:00Z
Tracer is not build in separate build_tracer.xml any more

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f226f747 by Andreas Tille at 2018-12-18T13:59:21Z
All *.jars now in build/dist, examples not part of release, no PDF docs any more

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dc0b5bdb by Andreas Tille at 2018-12-18T14:02:22Z
Upstream does not ship PDF docs any more thus drop -doc package

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ab3e0e86 by Andreas Tille at 2018-12-18T14:52:43Z
Versioned (Build-)Depends: libhmsbeagle-java (>= 3.1.2~)

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0e8c4814 by Andreas Tille at 2018-12-18T14:58:35Z
Upload to unstable

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30 changed files:

- build.xml
- build_bss.xml
- build_tempest.xml
- − debian/beast-mcmc-doc.install
- debian/beast-mcmc-examples.install
- debian/beast-mcmc.docs
- debian/beast-mcmc.install
- debian/changelog
- debian/control
- + debian/patches/ignore_mac_install.patch
- debian/patches/series
- debian/rules
- release/common/README.txt
- release/common/VERSION HISTORY.txt
- src/dr/app/beagle/tools/Partition.java
- src/dr/app/beagle/tools/parsers/PartitionParser.java
- src/dr/app/beast/BeastMain.java
- src/dr/app/beast/BeastVersion.java
- src/dr/app/beast/development_parsers.properties
- src/dr/app/beast/release_parsers.properties
- src/dr/app/beauti/options/PartitionTreePrior.java
- src/dr/app/bss/BeagleSequenceSimulatorApp.java
- src/dr/app/bss/Utils.java
- src/dr/app/checkpoint/BeastCheckpointer.java
- src/dr/app/checkpoint/checkpointing.md
- src/dr/app/realtime/CheckPointModifier.java
- src/dr/app/realtime/CheckPointUpdaterApp.java
- src/dr/app/tools/LogCombiner.java
- src/dr/evolution/datatype/HiddenNucleotides.java
- src/dr/evomodel/antigenic/CRPClusterRandomWalkOperator.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/beast-mcmc/compare/f3152232eb8da49e6f0b7962a1a0f984216c7d6d...0e8c48145b38c678c18a9d1cbd04eb7aa70df039

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View it on GitLab: https://salsa.debian.org/med-team/beast-mcmc/compare/f3152232eb8da49e6f0b7962a1a0f984216c7d6d...0e8c48145b38c678c18a9d1cbd04eb7aa70df039
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