[med-svn] [Git][med-team/bcbio][upstream] New upstream version 1.1.4

[Steffen Möller]

Steffen Möller pushed to branch upstream at Debian Med / bcbio


Commits:
7e68a1c2 by Steffen Möller at 2019-04-11T10:55:17Z
New upstream version 1.1.4
- - - - -


30 changed files:

- .gitignore
- HISTORY.md
- bcbio/bam/__init__.py
- bcbio/bam/callable.py
- bcbio/bam/fastq.py
- bcbio/broad/__init__.py
- bcbio/chipseq/__init__.py
- bcbio/chipseq/macs2.py
- bcbio/cwl/create.py
- bcbio/cwl/defs.py
- bcbio/cwl/hpc.py
- bcbio/cwl/tool.py
- bcbio/cwl/workflow.py
- bcbio/distributed/runfn.py
- bcbio/hla/optitype.py
- bcbio/install.py
- bcbio/ngsalign/postalign.py
- bcbio/pipeline/alignment.py
- bcbio/pipeline/config_utils.py
- bcbio/pipeline/datadict.py
- bcbio/pipeline/genome.py
- bcbio/pipeline/qcsummary.py
- bcbio/pipeline/rnaseq.py
- bcbio/pipeline/run_info.py
- bcbio/pipeline/sample.py
- bcbio/provenance/do.py
- bcbio/provenance/system.py
- bcbio/qc/multiqc.py
- bcbio/qc/qualimap.py
- bcbio/qc/variant.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bcbio/commit/7e68a1c2b85360ecaab4e1abd57faf298fbcb64b

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