[med-svn] [Git][med-team/bcbio][master] 4 commits: New upstream version 1.1.4

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / bcbio


Commits:
7e68a1c2 by Steffen Möller at 2019-04-11T10:55:17Z
New upstream version 1.1.4
- - - - -
d7b53059 by Steffen Möller at 2019-04-11T10:56:14Z
Update upstream source from tag 'upstream/1.1.4'

Update to upstream version '1.1.4'
with Debian dir 3a7e136e3d6bf67998442cc491be453fc411f09f
- - - - -
189397ab by Steffen Möller at 2019-04-14T14:41:16Z
Uploaded .14 new upstream version

Work on tests needs to be completed.

- - - - -
94e81687 by Steffen Möller at 2019-04-14T14:42:11Z
Merge branch 'master' of salsa.debian.org:med-team/bcbio

- - - - -


30 changed files:

- .gitignore
- HISTORY.md
- bcbio/bam/__init__.py
- bcbio/bam/callable.py
- bcbio/bam/fastq.py
- bcbio/broad/__init__.py
- bcbio/chipseq/__init__.py
- bcbio/chipseq/macs2.py
- bcbio/cwl/create.py
- bcbio/cwl/defs.py
- bcbio/cwl/hpc.py
- bcbio/cwl/tool.py
- bcbio/cwl/workflow.py
- bcbio/distributed/runfn.py
- bcbio/hla/optitype.py
- bcbio/install.py
- bcbio/ngsalign/postalign.py
- bcbio/pipeline/alignment.py
- bcbio/pipeline/config_utils.py
- bcbio/pipeline/datadict.py
- bcbio/pipeline/genome.py
- bcbio/pipeline/qcsummary.py
- bcbio/pipeline/rnaseq.py
- bcbio/pipeline/run_info.py
- bcbio/pipeline/sample.py
- bcbio/provenance/do.py
- bcbio/provenance/system.py
- bcbio/qc/multiqc.py
- bcbio/qc/qualimap.py
- bcbio/qc/variant.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bcbio/compare/da6716984c75348e92aab043a53eca28ffcb4112...94e816873954e01492d7ed42a4bb6554f9f9a36d

-- 
View it on GitLab: https://salsa.debian.org/med-team/bcbio/compare/da6716984c75348e92aab043a53eca28ffcb4112...94e816873954e01492d7ed42a4bb6554f9f9a36d
You're receiving this email because of your account on salsa.debian.org.

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20190414/83e96b97/attachment.html>