[med-svn] [Git][med-team/manta][upstream] New upstream version 1.5.0+dfsg

[Andreas Tille]

Andreas Tille pushed to branch upstream at Debian Med / manta


Commits:
d55193c8 by Andreas Tille at 2019-04-24T14:56:18Z
New upstream version 1.5.0+dfsg
- - - - -


30 changed files:

- CHANGELOG.md
- README.md
- docs/developerGuide/README.md
- docs/methods/primary/methods.tex
- docs/userGuide/README.md
- src/c++/lib/alignment/AlignmentScoringUtilImpl.hh
- src/c++/lib/alignment/GlobalLargeIndelAlignerImpl.hh
- src/c++/lib/alignment/SingleRefAlignerShared.hh
- src/c++/lib/alignment/SingleRefAlignerSharedImpl.hh
- src/c++/lib/applications/EstimateSVLoci/ESLOptions.cpp
- src/c++/lib/applications/GenerateSVCandidates/EdgeRetrieverJumpBin.hh
- src/c++/lib/applications/GenerateSVCandidates/FatSVCandidate.cpp
- src/c++/lib/applications/GenerateSVCandidates/FatSVCandidate.hh
- src/c++/lib/applications/GenerateSVCandidates/GSCOptions.cpp
- src/c++/lib/applications/GenerateSVCandidates/GSCOptions.hh
- src/c++/lib/applications/GenerateSVCandidates/GenerateSVCandidates.cpp
- src/c++/lib/applications/GenerateSVCandidates/SVCandidateAssemblyRefiner.cpp
- src/c++/lib/applications/GenerateSVCandidates/SVCandidateAssemblyRefiner.hh
- src/c++/lib/applications/GenerateSVCandidates/SVFinder.cpp
- src/c++/lib/applications/GenerateSVCandidates/SVFinder.hh
- src/c++/lib/applications/GenerateSVCandidates/SVScorePairAltProcessor.cpp
- src/c++/lib/applications/GenerateSVCandidates/SVScorePairAltProcessor.hh
- src/c++/lib/applications/GenerateSVCandidates/SVScorePairRefProcessor.hh
- src/c++/lib/applications/GenerateSVCandidates/SVScorer.cpp
- src/c++/lib/applications/GetAlignmentStats/AlignmentStatsOptions.cpp
- src/c++/lib/applications/GetChromDepth/ChromDepthOptions.cpp
- src/c++/lib/applications/MergeAlignmentStats/MergeAlignmentStats.hh
- src/c++/lib/applications/MergeAlignmentStats/MergeAlignmentStatsOptions.cpp
- src/c++/lib/applications/SummarizeAlignmentStats/SASOptions.cpp
- src/c++/lib/applications/SummarizeAlignmentStats/SummarizeAlignmentStats.hh


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/manta/commit/d55193c8730efeae3224273c4378c89236541994

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View it on GitLab: https://salsa.debian.org/med-team/manta/commit/d55193c8730efeae3224273c4378c89236541994
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