[med-svn] [Git][med-team/ragout][upstream] New upstream version 2.2

[Andreas Tille]

Andreas Tille pushed to branch upstream at Debian Med / ragout


Commits:
bf7e8e40 by Andreas Tille at 2019-09-05T08:06:49Z
New upstream version 2.2
- - - - -


30 changed files:

- .travis.yml
- README.md
- bin/ragout
- docs/INSTALL.md
- ragout/__version__.py
- ragout/assembly_graph/assembly_refine.py
- ragout/breakpoint_graph/breakpoint_graph.py
- ragout/breakpoint_graph/chimera_detector.py
- ragout/breakpoint_graph/inferer.py
- ragout/breakpoint_graph/repeat_resolver.py
- ragout/maf2synteny/cpp_impl/breakpoint_graph.cpp
- ragout/maf2synteny/cpp_impl/maf_tools.cpp
- ragout/maf2synteny/cpp_impl/maf_tools.h
- ragout/maf2synteny/cpp_impl/main.cpp
- lib/newick/AUTHORS → ragout/newick/AUTHORS
- lib/newick/COPYING → ragout/newick/COPYING
- lib/newick/__init__.py → ragout/newick/__init__.py
- lib/newick/lexer.py → ragout/newick/lexer.py
- lib/newick/lexertest.py → ragout/newick/lexertest.py
- lib/newick/parser.py → ragout/newick/parser.py
- lib/newick/parsertest.py → ragout/newick/parsertest.py
- lib/newick/tokens.py → ragout/newick/tokens.py
- lib/newick/tree.py → ragout/newick/tree.py
- lib/newick/treetest.py → ragout/newick/treetest.py
- ragout/parsers/phylogeny_parser.py
- ragout/phylogeny/inferer.py
- ragout/scaffolder/merge_iters.py
- + requirements.txt
- − scripts/blocks-dotplot.py
- − scripts/chromosome-report.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/ragout/commit/bf7e8e409d47afbbc700da2374671dab33a665f6

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