[med-svn] [Git][med-team/ragout][master] 7 commits: New upstream version

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / ragout


Commits:
891eaa4e by Andreas Tille at 2019-09-05T08:06:47Z
New upstream version

- - - - -
bf7e8e40 by Andreas Tille at 2019-09-05T08:06:49Z
New upstream version 2.2
- - - - -
ea7b66ef by Andreas Tille at 2019-09-05T08:08:13Z
Update upstream source from tag 'upstream/2.2'

Update to upstream version '2.2'
with Debian dir da252f8f2410e700f10baa970738fbaafae39d06
- - - - -
62442c99 by Andreas Tille at 2019-09-05T08:08:13Z
debhelper-compat 12

- - - - -
2790d9e3 by Andreas Tille at 2019-09-05T08:08:20Z
Standards-Version: 4.4.0

- - - - -
24c76362 by Andreas Tille at 2019-09-05T08:19:16Z
Patches applied upstream

- - - - -
7fd807c9 by Andreas Tille at 2019-09-05T09:23:47Z
Use 2to3 to port to Python3

- - - - -


30 changed files:

- .travis.yml
- README.md
- bin/ragout
- debian/changelog
- − debian/compat
- debian/control
- + debian/patches/2to3.patch
- − debian/patches/d49a5c46f73c1a4a2bfcbf5bbe41b9d2dab5f5f0.patch
- − debian/patches/e3a06ef1256cf132903bbf19c9d4e11ea846e6df.patch
- − debian/patches/f4d4e2223a337abdbc5873fd6560e1494e55342d.patch
- − debian/patches/install_newick.patch
- debian/patches/series
- debian/rules
- docs/INSTALL.md
- ragout/__version__.py
- ragout/assembly_graph/assembly_refine.py
- ragout/breakpoint_graph/breakpoint_graph.py
- ragout/breakpoint_graph/chimera_detector.py
- ragout/breakpoint_graph/inferer.py
- ragout/breakpoint_graph/repeat_resolver.py
- ragout/maf2synteny/cpp_impl/breakpoint_graph.cpp
- ragout/maf2synteny/cpp_impl/maf_tools.cpp
- ragout/maf2synteny/cpp_impl/maf_tools.h
- ragout/maf2synteny/cpp_impl/main.cpp
- lib/newick/AUTHORS → ragout/newick/AUTHORS
- lib/newick/COPYING → ragout/newick/COPYING
- lib/newick/__init__.py → ragout/newick/__init__.py
- lib/newick/lexer.py → ragout/newick/lexer.py
- lib/newick/lexertest.py → ragout/newick/lexertest.py
- lib/newick/parser.py → ragout/newick/parser.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/ragout/compare/5442121e1be7d2c68f67bb950056b809b069715a...7fd807c91bdd0b3ec5d28ef52aeb17528821da60

-- 
View it on GitLab: https://salsa.debian.org/med-team/ragout/compare/5442121e1be7d2c68f67bb950056b809b069715a...7fd807c91bdd0b3ec5d28ef52aeb17528821da60
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20190905/4613bca3/attachment-0001.html>