[med-svn] [Git][med-team/bowtie2][master] 10 commits: routine-update: New upstream version

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / bowtie2


Commits:
af9e96fa by Michael R. Crusoe at 2020-03-01T11:16:51+01:00
routine-update: New upstream version

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28c3e098 by Michael R. Crusoe at 2020-03-01T11:16:53+01:00
New upstream version 2.4.1
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e23d15da by Michael R. Crusoe at 2020-03-01T11:17:06+01:00
Update upstream source from tag 'upstream/2.4.1'

Update to upstream version '2.4.1'
with Debian dir 41af0a984657070321cd57e9fd5fd54dfb696bec
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c2b1d2c2 by Michael R. Crusoe at 2020-03-01T11:17:06+01:00
routine-update: Standards-Version: 4.5.0

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8ce26308 by Michael R. Crusoe at 2020-04-04T09:43:42+02:00
Freshen patches

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a1402642 by Michael R. Crusoe at 2020-04-04T09:43:43+02:00
no need to exclude files

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e0a72811 by Michael R. Crusoe at 2020-04-04T09:43:43+02:00
debian/upstream/metadata: Add Bug-{Database,Submit},Repository{,-Browse}

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55a2516c by Michael R. Crusoe at 2020-04-04T10:32:18+02:00
Update SIMDe version to 2a9ff6ddabfb940bdd29a0a0cd1ae3190f5fc97b 2020-04-03

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c789dc07 by Michael R. Crusoe at 2020-04-04T10:32:18+02:00
enable building in pbuilder

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c801da14 by Michael R. Crusoe at 2020-04-04T10:32:19+02:00
release 2.4.1-1

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26 changed files:

- CMakeLists.txt
- − Dockerfile-aarch64
- MANUAL
- MANUAL.markdown
- Makefile
- NEWS
- README.md
- VERSION
- aligner_seed_policy.cpp
- aln_sink.cpp
- alphabet.cpp
- alphabet.h
- blockwise_sa.h
- bowtie2
- bowtie2-build
- bowtie2-inspect
- bt2_build.cpp
- bt2_idx.h
- bt2_search.cpp
- debian/changelog
- debian/control
- debian/copyright
- debian/include/simde/check.h
- + debian/include/simde/debug-trap.h
- debian/include/simde/simde-arch.h
- debian/include/simde/simde-common.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bowtie2/-/compare/0ab5ce6d0cfdef1c1d068eb0c16d7b5229cadb94...c801da14953540bafd3005114d045776db47eb70

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View it on GitLab: https://salsa.debian.org/med-team/bowtie2/-/compare/0ab5ce6d0cfdef1c1d068eb0c16d7b5229cadb94...c801da14953540bafd3005114d045776db47eb70
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