[med-svn] [Git][med-team/pufferfish][master] 16 commits: tweak setcover

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / pufferfish


Commits:
7f94c769 by Michael R. Crusoe at 2020-02-22T13:54:23+01:00
tweak setcover

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90b8271a by Michael R. Crusoe at 2020-02-23T19:22:34+01:00
Fix build

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e44594ef by Michael R. Crusoe at 2020-02-23T19:35:13+01:00
Manual install

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e7fe0f0c by Michael R. Crusoe at 2020-02-28T17:32:26+01:00
1.1.0 needs kseq.h

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951fa07b by Michael R. Crusoe at 2020-03-01T16:31:34+01:00
TODO: ask upstream to upgrade their use of spdlog, cereal, and fmt

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1d581d72 by Michael R. Crusoe at 2020-03-01T16:32:56+01:00
New upstream version 1.1.0
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7623c3d1 by Michael R. Crusoe at 2020-03-01T16:32:56+01:00
routine-update: New upstream version

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f41d4ad9 by Michael R. Crusoe at 2020-03-01T16:32:59+01:00
Update upstream source from tag 'upstream/1.1.0'

Update to upstream version '1.1.0'
with Debian dir a991f5eb8073c3c94955c1d9cb7fd955b684974e
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4b9d626e by Michael R. Crusoe at 2020-03-01T16:32:59+01:00
routine-update: Standards-Version: 4.5.0

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edd1f81a by Michael R. Crusoe at 2020-03-01T16:33:01+01:00
R-U: Trailing whitespace in debian/control

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4c8d8923 by Michael R. Crusoe at 2020-03-01T16:33:01+01:00
R-U: Trailing whitespace in debian/copyright

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d8b410da by Michael R. Crusoe at 2020-03-01T16:33:04+01:00
Set upstream metadata fields: Bug-Database, Bug-Submit.
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78ff9d65 by Michael R. Crusoe at 2020-03-01T16:33:05+01:00
Make "Files: *" paragraph the first in the copyright file.

Fixes: lintian: global-files-wildcard-not-first-paragraph-in-dep5-copyright
See-also: https://lintian.debian.org/tags/global-files-wildcard-not-first-paragraph-in-dep5-copyright.html

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4753abe0 by Michael R. Crusoe at 2020-03-01T16:33:41+01:00
clean up changelog

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88716add by Michael R. Crusoe at 2020-03-01T17:06:27+01:00
delete rpath

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4ccf437d by Michael R. Crusoe at 2020-03-01T17:51:59+01:00
cleanup copyright

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30 changed files:

- − bin/fixFasta
- debian/changelog
- debian/control
- debian/copyright
- − debian/doc-base
- + debian/install
- debian/patches/use-debian-libs
- debian/rules
- debian/upstream/metadata
- include/ProgOpts.hpp
- include/PuffAligner.hpp
- include/Util.hpp
- include/cereal/access.hpp
- include/cereal/archives/binary.hpp
- include/cereal/archives/json.hpp
- include/cereal/archives/portable_binary.hpp
- include/cereal/archives/xml.hpp
- include/cereal/cereal.hpp
- include/cereal/details/helpers.hpp
- include/cereal/details/polymorphic_impl.hpp
- include/cereal/details/static_object.hpp
- include/cereal/details/traits.hpp
- include/cereal/external/base64.hpp
- include/cereal/external/rapidjson/allocators.h
- include/cereal/external/rapidjson/document.h
- include/cereal/external/rapidjson/encodedstream.h
- include/cereal/external/rapidjson/encodings.h
- include/cereal/external/rapidjson/error/error.h
- include/cereal/external/rapidjson/filereadstream.h
- include/cereal/external/rapidjson/filewritestream.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/pufferfish/-/compare/1d3e3e2d47e2867964b9a7112c18beccd3c6a72f...4ccf437d247f71b58bc9c31d2d7f50ea1445ee02

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View it on GitLab: https://salsa.debian.org/med-team/pufferfish/-/compare/1d3e3e2d47e2867964b9a7112c18beccd3c6a72f...4ccf437d247f71b58bc9c31d2d7f50ea1445ee02
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