Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
f6c33f65 by Andreas Tille at 2020-04-14T13:44:37+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,65 +1,66 @@
-Last-Update: Tue, 14 Apr 2020 01:42:03 +0000
+Last-Update: Tue, 14 Apr 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 173 | {covid-19,imaging} |
- orthanc | 94 | {imaging,covid-19,practice} |
- gdcm | 42 | {imaging-dev} |
- orthanc-wsi | 38 | {laboratory,imaging,his,practice,covid-19,oncology} |
- amide | 28 | {imaging} |
- htsjdk | 28 | {bio-dev} |
- dcm2niix | 26 | {imaging} |
- dicomscope | 25 | {imaging} |
+ orthanc | 95 | {imaging,covid-19,practice} |
+ gdcm | 40 | {imaging-dev} |
+ orthanc-wsi | 39 | {laboratory,imaging,his,practice,covid-19,oncology} |
+ amide | 29 | {imaging} |
+ htsjdk | 27 | {bio-dev} |
+ dcm2niix | 24 | {imaging} |
dicom3tools | 24 | {imaging} |
+ dicomscope | 24 | {imaging} |
gdcm | 22 | {imaging,covid-19} |
- gnumed-server | 21 | {covid-19,practice} |
+ gnumed-server | 22 | {covid-19,practice} |
ngs-sdk | 17 | {bio-dev} |
- hunspell-en-med | 14 | {tools} |
- minc-tools | 14 | {imaging} |
adun.app | 13 | {bio} |
- vtk-dicom | 13 | {imaging} |
+ minc-tools | 13 | {imaging} |
+ hunspell-en-med | 12 | {tools} |
invesalius | 12 | {imaging} |
king | 12 | {imaging,typesetting} |
- ncbi-entrez-direct | 12 | {bio} |
+ ncbi-entrez-direct | 11 | {bio} |
pixelmed | 11 | {imaging} |
- ea-utils | 10 | {bio} |
- insighttoolkit4 | 10 | {imaging-dev} |
ngs-sdk | 10 | {bio-dev} |
+ vtk-dicom | 10 | {imaging} |
biosig4c++ | 9 | {imaging,physics} |
- cgview | 9 | {bio} |
+ ea-utils | 9 | {bio} |
gasic | 9 | {cloud,bio} |
gdcm | 9 | {imaging-dev} |
+ insighttoolkit4 | 9 | {imaging-dev} |
jebl2 | 9 | {bio-dev} |
mia | 9 | {imaging} |
openslide | 9 | {imaging} |
+ plastimatch | 9 | {imaging} |
psychopy | 9 | {psychology} |
staden | 9 | {bio} |
- king-probe | 8 | {bio} |
+ cgview | 8 | {bio} |
librg-utils-perl | 8 | {bio} |
- plastimatch | 8 | {imaging} |
tree-puzzle | 8 | {cloud,bio,bio-phylogeny} |
+ king-probe | 7 | {bio} |
mipe | 7 | {cloud,bio} |
- paml | 7 | {bio} |
parsnp | 7 | {bio} |
salmon | 7 | {bio} |
anfo | 6 | {bio,cloud} |
arden | 6 | {cloud,bio} |
biojava-live | 6 | {bio-dev} |
- bppsuite | 6 | {bio} |
dazzdb | 6 | {bio} |
diamond-aligner | 6 | {bio,covid-19} |
ecopcr | 6 | {bio} |
fitgcp | 6 | {cloud,bio} |
lagan | 6 | {bio} |
+ mrs | 6 | {bio} |
ncbi-seg | 6 | {bio} |
neobio | 6 | {bio,cloud} |
norsp | 6 | {bio} |
obitools | 6 | {bio} |
orthanc-webviewer | 6 | {imaging} |
+ paml | 6 | {bio} |
phast | 6 | {bio} |
pymia | 6 | {imaging-dev} |
abacas | 5 | {bio} |
ampliconnoise | 5 | {cloud,bio} |
+ bppsuite | 5 | {bio} |
clonalorigin | 5 | {bio} |
codonw | 5 | {bio} |
embassy-domainatrix | 5 | {cloud,bio} |
@@ -69,12 +70,10 @@ Last-Update: Tue, 14 Apr 2020 01:42:03 +0000
jaligner | 5 | {bio} |
melting | 5 | {bio,cloud} |
mencal | 5 | {tools} |
- mrs | 5 | {bio} |
openslide | 5 | {imaging-dev} |
piler | 5 | {bio} |
predictprotein | 5 | {bio} |
prime-phylo | 5 | {cloud,bio} |
- pscan-tfbs | 5 | {bio} |
radiant | 5 | {bio} |
rambo-k | 5 | {bio} |
seer | 5 | {bio} |
@@ -115,6 +114,7 @@ Last-Update: Tue, 14 Apr 2020 01:42:03 +0000
phyutility | 4 | {bio,cloud} |
placnet | 4 | {bio} |
pscan-chip | 4 | {bio} |
+ pscan-tfbs | 4 | {bio} |
rdp-alignment | 4 | {bio} |
rdp-readseq | 4 | {bio} |
relion | 4 | {bio} |
@@ -298,8 +298,8 @@ Last-Update: Tue, 14 Apr 2020 01:42:03 +0000
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
python-py2bit | 0 | {bio-dev,bio} |
- relion | 0 | {bio-dev} |
relion | 0 | {bio} |
+ relion | 0 | {bio-dev} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
=====================================
outdated_med-packages.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Tue, 14 Apr 2020 01:42:04 +0000
+Last-Update: Tue, 14 Apr 2020 13:42:04 +0000
source | version | upstream_version | uploaders | Last uploader | Last uploaded
-------------------------------+---------------------------------+---------------------------------+---------------------------------------------------------------------------+----------------------+------------------------
@@ -21,28 +21,29 @@ Last-Update: Tue, 14 Apr 2020 01:42:04 +0000
igdiscover | 0.11 | 0.12.3 | Steffen Moeller | Andreas Tille | 2019-09-06 07:04:02+00
igor | 1.3.0 | 1.4.0 | Steffen Moeller | Andreas Tille | 2019-01-26 17:51:04+00
igv | 2.4.17 | 2.8.2 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-01-30 15:11:57+00
- imagej | 1.52r | 1.52u | David Miguel Susano Pinto | Andreas Tille | 2019-12-04 14:55:11+00
+ imagej | 1.52r | 1.52v | David Miguel Susano Pinto | Andreas Tille | 2019-12-04 14:55:11+00
jebl2 | 0.1+git20180418.653eb83 | 0.1+git20190308.a98448e | Andreas Tille | Andreas Tille | 2018-07-05 12:05:57+00
kineticstools | 0.6.1+git20180425.27a1878 | 0.6.1+git20200325.3558942 | Andreas Tille | Andreas Tille | 2019-02-14 13:26:09+00
king-probe | 2.16.160404+git20180613.a09b012 | 2.16.160404+git20200121.9b198c1 | Andreas Tille,Malihe Asemani,Michael Prisant | Andreas Tille | 2018-07-16 07:34:48+00
kissplice | 2.4.0-p1 | 2.5.0 | Andreas Tille,David Parsons | Saira Hussain | 2019-08-14 21:04:51+00
kma | 1.2.21 | 1.2.22 | Andreas Tille | Steffen Moeller | 2020-01-17 22:54:10+00
libedlib | 1.2.4 | 1.2.6 | Andreas Tille | Andreas Tille | 2019-08-19 00:34:56+00
- libgclib | 0.11.4 | 0.11.7 | Andreas Tille,Michael R. Crusoe,Steffen Moeller | Michael R. Crusoe | 2020-02-14 13:04:26+00
+ libgclib | 0.11.4 | 0.11.8 | Andreas Tille,Michael R. Crusoe,Steffen Moeller | Michael R. Crusoe | 2020-02-14 13:04:26+00
libjloda-java | 0.0+git20180523.cbaf6d1 | 0.0+git20200409.de58067 | Andreas Tille | Andreas Tille | 2018-05-25 21:49:43+00
libmaus2 | 2.0.713 | 2.0.715 | Andreas Tille,Steffen Moeller | Andreas Tille | 2020-03-27 09:34:39+00
libsis-base-java | 18.09~pre1+git20180827.fe4953e | 18.09~pre1+git20180928.45fbd31 | Andreas Tille,Olivier Sallou,Tim Booth | Andreas Tille | 2018-09-26 08:35:30+00
libthread-pool | 2.0.1 | 2.0.2 | Andreas Tille | Andreas Tille | 2019-11-19 21:21:23+00
libundead | 1.0.10 | 1.1.1 | Andreas Tille | Andreas Tille | 2019-09-13 21:06:10+00
+ macs | 2.2.6 | 2.2.7.1 | Andreas Tille,Michael R. Crusoe | Michael R. Crusoe | 2019-12-28 15:21:42+00
metaphlan2 | 2.9.22 | 2.96.1 | Andreas Tille | Andreas Tille | 2019-11-08 07:19:11+00
minia | 3.2.1+git20191130.5b131b9 | 3.2.1+git20200409.489e374 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-12-16 09:04:06+00
mummer | 3.23 | 4.0.0~beta2 | Andreas Tille,Charles Plessy,Steffen Moeller | Andreas Tille | 2018-06-11 07:19:31+00
ncbi-blast+ | 2.9.0 | 2.10.0 | Aaron M. Ucko,Andreas Tille,Olivier Sallou | Aaron M. Ucko | 2020-02-17 01:50:53+00
ncbi-entrez-direct | 12.0.20190816 | 13.5.20200326 | Aaron M. Ucko | Aaron M. Ucko | 2020-02-03 03:53:53+00
nibabel | 3.0.1 | 3.0.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-03 14:58:34+00
+ pbcopper | 1.3.0 | 1.4.0 | Andreas Tille | Andreas Tille | 2020-01-29 08:51:15+00
pbgenomicconsensus | 2.3.2 | 2.3.3 | Andreas Tille | Liubov Chuprikova | 2019-04-07 15:33:36+00
plink2 | 2.00~a3-200217 | 200409 | Dylan Aïssi | Dylan Aïssi | 2020-02-19 06:19:18+00
- pybel | 0.14.5 | 0.14.6 | Steffen Moeller | Andreas Tille | 2020-03-29 18:48:55+00
pynn | 0.7.5 | 0.9.5 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-04-03 16:34:56+00
python-avro | 1.9.1 | 1.9.2 | Afif Elghraoui | Andreas Tille | 2019-12-18 08:41:55+00
python-bids-validator | 1.2.4 | 1.5.1 | Yaroslav Halchenko | Yaroslav Halchenko | 2019-08-17 19:00:11+00
@@ -51,25 +52,23 @@ Last-Update: Tue, 14 Apr 2020 01:42:04 +0000
python-colormap | 1.0.2 | 1.0.3 | Andreas Tille | Andreas Tille | 2019-12-06 16:51:43+00
python-pbcore | 1.7.1+git20200313.41ba394 | 1.7.1+git20200408.0579ac1 | Andreas Tille | Steffen Moeller | 2020-03-21 19:39:08+00
python-xopen | 0.8.4 | 0.9.0 | Andreas Tille | Steffen Moeller | 2019-11-05 15:34:45+00
- q2cli | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-12-16 10:20:08+00
q2-cutadapt | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:34:32+00
q2-demux | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:34:40+00
q2templates | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-11-14 22:00:17+00
- qiime | 2019.10.0 | 2020.2.0 | Andreas Tille,Liubov Chuprikova,Steffen Moeller | Liubov Chuprikova | 2019-12-16 09:51:27+00
relion | 1.4 | 3.0.8 | Andreas Tille,Goswin von Brederlow,Navid Fehrenbacher,Roland Fehrenbacher | Andreas Tille | 2018-06-14 12:49:40+00
resfinder-db | 0.0+git20191001.149209d | 0.0+git20200408.0322c0d | Andreas Tille | Andreas Tille | 2019-11-16 23:00:12+00
salmon | 0.12.0 | 1.2.0 | Kevin Murray,Michael R. Crusoe | Andreas Tille | 2018-12-13 19:05:56+00
seaview | 4.7 | 5.0.2 | Andreas Tille,Charles Plessy | Andreas Tille | 2018-05-09 13:43:40+00
+ simde | 0.0.0.git.20200412 | 0.0.0.git.20200413 | Michael R. Crusoe | Michael R. Crusoe | 2020-04-13 09:04:31+00
simpleitk | 1.0.1 | 1.2.0 | Ghislain Antony Vaillant | Andreas Tille | 2019-01-30 10:06:08+00
snakemake | 5.10.0 | 5.14.0 | Kevin Murray | Andreas Tille | 2020-04-09 09:34:37+00
- spades | 3.13.1 | 3.14.0 | Alexandre Mestiashvili,Andreas Tille,Michael R. Crusoe,Sascha Steinbiss | Andreas Tille | 2019-11-22 10:05:04+00
stacks | 2.52 | 2.53 | Andreas Tille,Tim Booth | Steffen Moeller | 2020-03-26 02:50:13+00
t-coffee | 12.00.7fb08c2 | 13.41.0.28bdc39 | Andreas Tille,Steffen Moeller | Andreas Tille | 2019-02-15 07:57:10+00
tnseq-transit | 3.0.2 | 3.1.0 | Andreas Tille | Steffen Moeller | 2020-01-18 22:25:05+00
unanimity | 3.3.0 | 4.2.0-1 | Afif Elghraoui,Andreas Tille | Adrian Bunk | 2019-02-06 07:34:42+00
vsearch | 2.14.1 | 2.14.2 | Andreas Tille,Tim Booth | Andreas Tille | 2019-12-17 10:07:09+00
xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00
-(67 rows)
+(66 rows)
source | id | severity | title
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/f6c33f6570b53aa0d77e3a2cac5c62143f9dfb5c
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/f6c33f6570b53aa0d77e3a2cac5c62143f9dfb5c
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