[med-svn] [Git][med-team/community/helper-scripts][master] automatic update

Andreas Tille gitlab at salsa.debian.org
Wed Apr 15 02:44:39 BST 2020



Andreas Tille pushed to branch master at Debian Med / community / helper-scripts


Commits:
9951f785 by Andreas Tille at 2020-04-15T01:44:35+00:00
automatic update

- - - - -


2 changed files:

- debian-med-tests.txt
- outdated_med-packages.txt


Changes:

=====================================
debian-med-tests.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Tue, 14 Apr 2020 13:42:04 +0000
+Last-Update: Wed, 15 Apr 2020 01:42:03 +0000
 
  Source                        | Vote   |     Tasks                                           |                                 Tags                                 
 -------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------


=====================================
outdated_med-packages.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Tue, 14 Apr 2020 13:42:04 +0000
+Last-Update: Wed, 15 Apr 2020 01:42:03 +0000
 
  source                        |             version             |        upstream_version         |                      uploaders                                            | Last uploader        |     Last uploaded      
 -------------------------------+---------------------------------+---------------------------------+---------------------------------------------------------------------------+----------------------+------------------------
@@ -19,7 +19,6 @@ Last-Update: Tue, 14 Apr 2020 13:42:04 +0000
  htseq                         | 0.11.3                          | 0.11.4                          | Andreas Tille,Diane Trout                                                 | Diane Trout          | 2020-03-04 07:04:25+00
  hyphy                         | 2.5.1                           | 2.5.8                           | Andreas Tille                                                             | Andreas Tille        | 2020-01-07 21:19:50+00
  igdiscover                    | 0.11                            | 0.12.3                          | Steffen Moeller                                                           | Andreas Tille        | 2019-09-06 07:04:02+00
- igor                          | 1.3.0                           | 1.4.0                           | Steffen Moeller                                                           | Andreas Tille        | 2019-01-26 17:51:04+00
  igv                           | 2.4.17                          | 2.8.2                           | Andreas Tille,Olivier Sallou                                              | Andreas Tille        | 2019-01-30 15:11:57+00
  imagej                        | 1.52r                           | 1.52v                           | David Miguel Susano Pinto                                                 | Andreas Tille        | 2019-12-04 14:55:11+00
  jebl2                         | 0.1+git20180418.653eb83         | 0.1+git20190308.a98448e         | Andreas Tille                                                             | Andreas Tille        | 2018-07-05 12:05:57+00
@@ -59,7 +58,6 @@ Last-Update: Tue, 14 Apr 2020 13:42:04 +0000
  resfinder-db                  | 0.0+git20191001.149209d         | 0.0+git20200408.0322c0d         | Andreas Tille                                                             | Andreas Tille        | 2019-11-16 23:00:12+00
  salmon                        | 0.12.0                          | 1.2.0                           | Kevin Murray,Michael R. Crusoe                                            | Andreas Tille        | 2018-12-13 19:05:56+00
  seaview                       | 4.7                             | 5.0.2                           | Andreas Tille,Charles Plessy                                              | Andreas Tille        | 2018-05-09 13:43:40+00
- simde                         | 0.0.0.git.20200412              | 0.0.0.git.20200413              | Michael R. Crusoe                                                         | Michael R. Crusoe    | 2020-04-13 09:04:31+00
  simpleitk                     | 1.0.1                           | 1.2.0                           | Ghislain Antony Vaillant                                                  | Andreas Tille        | 2019-01-30 10:06:08+00
  snakemake                     | 5.10.0                          | 5.14.0                          | Kevin Murray                                                              | Andreas Tille        | 2020-04-09 09:34:37+00
  stacks                        | 2.52                            | 2.53                            | Andreas Tille,Tim Booth                                                   | Steffen Moeller      | 2020-03-26 02:50:13+00
@@ -68,7 +66,7 @@ Last-Update: Tue, 14 Apr 2020 13:42:04 +0000
  unanimity                     | 3.3.0                           | 4.2.0-1                         | Afif Elghraoui,Andreas Tille                                              | Adrian Bunk          | 2019-02-06 07:34:42+00
  vsearch                       | 2.14.1                          | 2.14.2                          | Andreas Tille,Tim Booth                                                   | Andreas Tille        | 2019-12-17 10:07:09+00
  xmedcon                       | 0.16.1                          | 0.16.2                          | Andreas Tille,Roland Marcus Rutschmann                                    | Andreas Tille        | 2019-01-25 18:23:59+00
-(66 rows)
+(64 rows)
 
 
  source                        |   id   | severity  |                                                                                               title                                                                                               
@@ -93,6 +91,8 @@ Last-Update: Tue, 14 Apr 2020 13:42:04 +0000
  bwa                           | 942447 | normal    | Build bwa on ppc64el
  camp                          | 900181 | normal    | camp: FTBFS on 32bit big endian: check metaclass->function("f4").call(object, camp::Args(1, 4, 15)).to<unsigned long>() == 20 has failed
  clonalorigin                  | 884475 | wishlist  | clonalorigin: FTBFS on alpha: tests time out
+ clustalo                      | 956324 | serious   | "clustalo: Bus error on mipsel"
+ cyvcf2                        | 956675 | serious   | cyvcf2: test failures on mipsel, ppc64el and s390x
  dawg                          | 903886 | important | dawg: Test suite fails
  dcmtk                         | 637687 | wishlist  | libdcmtk2-dev: Dcmtk headers cause compile failure
  dcmtk                         | 675448 | important | dcmtk: dcmdjpeg does not set (0028, 2114) LossyImageCompressionMethod when decompressing lossy compressed DICOM file
@@ -209,9 +209,7 @@ Last-Update: Tue, 14 Apr 2020 13:42:04 +0000
  psychopy                      | 953053 | important | psychopy: missing python3 dependencies
  pynast                        | 937488 | serious   | pynast: Python2 removal in sid/bullseye
  pynast                        | 948081 | serious   | pynast build depends on and recommends the removed blast2 transitional package
- python-biom-format            | 820060 | normal    | python-biom-format: broken on big-endian architectures
  python-biom-format            | 950929 | normal    | python-biom-format: FTBFS with pandas 1.0: test failures
- python-biopython              | 956324 | serious   | python-biopython: FTBFS on mipsel
  python-cobra                  | 955656 | serious   | python-cobra: FTBFS: E   ModuleNotFoundError: No module named 'matplotlib'
  python-cogent                 | 950474 | important | python-cogent FTBFS on armel and i386: test failures
  python-intervaltree-bio       | 920545 | serious   | python-intervaltree breaks python-intervaltree-bio autopkgtest
@@ -238,8 +236,6 @@ Last-Update: Tue, 14 Apr 2020 13:42:04 +0000
  sambamba                      | 948919 | serious   | sambamba FTBFS: undefined reference to 'cram_to_bam'
  seqan2                        | 892222 | normal    | seqan2: FTBFS on hppa: app_test_seqan_tcoffee fails on 2trx.mlcs.fasta
  seqan2                        | 917851 | important | seqan2 2.4.0+dfsg-9: FTBFS, alignment problem
- seqsero                       | 955648 | serious   | seqsero: FTBFS: build-dependency not installable: sra-toolkit
- sibelia                       | 956575 | serious   | sibelia: binary-all FTBFS
  sight                         | 954711 | wishlist  | FTBFS with Boost 1.71
  simka                         | 954273 | important | simka: arm64 autopkgtest time out
  simpleitk                     | 949355 | serious   | simpleitk FTBFS: test failures
@@ -265,5 +261,5 @@ Last-Update: Tue, 14 Apr 2020 13:42:04 +0000
  xmedcon                       | 671828 | normal    | xmedcon: Cannot open file with YBR photometric interpretation
  xmedcon                       | 779707 | normal    | Errors when reading dicomdir file: "No images found" / "Loading: DICM Error reading file"
  xmedcon                       | 924017 | normal    | desktop entry
-(192 rows)
+(190 rows)
 



View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/9951f7857234b59c1cd9e29a2298ca03dcac8e35

-- 
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/9951f7857234b59c1cd9e29a2298ca03dcac8e35
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