Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
4fb31f10 by Andreas Tille at 2020-04-15T13:44:29+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,37 +1,37 @@
-Last-Update: Wed, 15 Apr 2020 01:42:03 +0000
+Last-Update: Wed, 15 Apr 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 173 | {covid-19,imaging} |
- orthanc | 95 | {imaging,covid-19,practice} |
- gdcm | 40 | {imaging-dev} |
- orthanc-wsi | 39 | {laboratory,imaging,his,practice,covid-19,oncology} |
- amide | 29 | {imaging} |
- htsjdk | 27 | {bio-dev} |
- dcm2niix | 24 | {imaging} |
- dicom3tools | 24 | {imaging} |
+ dcmtk | 175 | {covid-19,imaging} |
+ orthanc | 98 | {imaging,covid-19,practice} |
+ gdcm | 43 | {imaging-dev} |
+ orthanc-wsi | 38 | {laboratory,imaging,his,practice,covid-19,oncology} |
+ amide | 28 | {imaging} |
+ htsjdk | 28 | {bio-dev} |
+ dcm2niix | 26 | {imaging} |
+ dicom3tools | 26 | {imaging} |
dicomscope | 24 | {imaging} |
- gdcm | 22 | {imaging,covid-19} |
- gnumed-server | 22 | {covid-19,practice} |
+ gdcm | 24 | {imaging,covid-19} |
+ gnumed-server | 21 | {covid-19,practice} |
ngs-sdk | 17 | {bio-dev} |
adun.app | 13 | {bio} |
+ invesalius | 13 | {imaging} |
minc-tools | 13 | {imaging} |
hunspell-en-med | 12 | {tools} |
- invesalius | 12 | {imaging} |
king | 12 | {imaging,typesetting} |
+ openslide | 12 | {imaging} |
+ pixelmed | 12 | {imaging} |
+ gdcm | 11 | {imaging-dev} |
ncbi-entrez-direct | 11 | {bio} |
- pixelmed | 11 | {imaging} |
- ngs-sdk | 10 | {bio-dev} |
+ ngs-sdk | 11 | {bio-dev} |
+ biosig4c++ | 10 | {imaging,physics} |
+ mia | 10 | {imaging} |
+ plastimatch | 10 | {imaging} |
vtk-dicom | 10 | {imaging} |
- biosig4c++ | 9 | {imaging,physics} |
ea-utils | 9 | {bio} |
gasic | 9 | {cloud,bio} |
- gdcm | 9 | {imaging-dev} |
insighttoolkit4 | 9 | {imaging-dev} |
jebl2 | 9 | {bio-dev} |
- mia | 9 | {imaging} |
- openslide | 9 | {imaging} |
- plastimatch | 9 | {imaging} |
psychopy | 9 | {psychology} |
staden | 9 | {bio} |
cgview | 8 | {bio} |
@@ -39,6 +39,7 @@ Last-Update: Wed, 15 Apr 2020 01:42:03 +0000
tree-puzzle | 8 | {cloud,bio,bio-phylogeny} |
king-probe | 7 | {bio} |
mipe | 7 | {cloud,bio} |
+ obitools | 7 | {bio} |
parsnp | 7 | {bio} |
salmon | 7 | {bio} |
anfo | 6 | {bio,cloud} |
@@ -53,7 +54,7 @@ Last-Update: Wed, 15 Apr 2020 01:42:03 +0000
ncbi-seg | 6 | {bio} |
neobio | 6 | {bio,cloud} |
norsp | 6 | {bio} |
- obitools | 6 | {bio} |
+ openslide | 6 | {imaging-dev} |
orthanc-webviewer | 6 | {imaging} |
paml | 6 | {bio} |
phast | 6 | {bio} |
@@ -70,7 +71,6 @@ Last-Update: Wed, 15 Apr 2020 01:42:03 +0000
jaligner | 5 | {bio} |
melting | 5 | {bio,cloud} |
mencal | 5 | {tools} |
- openslide | 5 | {imaging-dev} |
piler | 5 | {bio} |
predictprotein | 5 | {bio} |
prime-phylo | 5 | {cloud,bio} |
@@ -215,7 +215,6 @@ Last-Update: Wed, 15 Apr 2020 01:42:03 +0000
blimps | 1 | {bio} |
ctn | 1 | {imaging-dev} |
embassy-phylip | 1 | {cloud,bio} |
- igor | 1 | {bio} |
kma | 1 | {bio} |
kmerresistance | 1 | {bio} |
libctapimkt | 1 | {practice} |
@@ -223,6 +222,7 @@ Last-Update: Wed, 15 Apr 2020 01:42:03 +0000
libvistaio | 1 | {imaging-dev} |
maxflow | 1 | {imaging-dev} |
nanook | 1 | {bio} |
+ ngs-sdk | 1 | {bio-dev} |
opensurgsim | 1 | {imaging-dev} |
orthanc-postgresql | 1 | {imaging} |
papyrus | 1 | {imaging-dev} |
@@ -291,7 +291,6 @@ Last-Update: Wed, 15 Apr 2020 01:42:03 +0000
multiqc | 0 | {bio} |
murasaki | 0 | {bio} |
ncbi-vdb | 0 | {bio-dev} |
- ngs-sdk | 0 | {bio-dev} |
opencfu | 0 | {laboratory} |
orthanc-imagej | 0 | {imaging} |
oscar | 0 | {practice,data,tools} |
@@ -314,5 +313,5 @@ Last-Update: Wed, 15 Apr 2020 01:42:03 +0000
vtk-dicom | 0 | {imaging-dev} |
wtdbg2 | 0 | {covid-19} |
bustools | -1 | {bio} |
-(342 rows)
+(341 rows)
=====================================
outdated_med-packages.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Wed, 15 Apr 2020 01:42:03 +0000
+Last-Update: Wed, 15 Apr 2020 13:42:04 +0000
source | version | upstream_version | uploaders | Last uploader | Last uploaded
-------------------------------+---------------------------------+---------------------------------+---------------------------------------------------------------------------+----------------------+------------------------
@@ -26,7 +26,6 @@ Last-Update: Wed, 15 Apr 2020 01:42:03 +0000
king-probe | 2.16.160404+git20180613.a09b012 | 2.16.160404+git20200121.9b198c1 | Andreas Tille,Malihe Asemani,Michael Prisant | Andreas Tille | 2018-07-16 07:34:48+00
kissplice | 2.4.0-p1 | 2.5.0 | Andreas Tille,David Parsons | Saira Hussain | 2019-08-14 21:04:51+00
kma | 1.2.21 | 1.2.22 | Andreas Tille | Steffen Moeller | 2020-01-17 22:54:10+00
- libedlib | 1.2.4 | 1.2.6 | Andreas Tille | Andreas Tille | 2019-08-19 00:34:56+00
libgclib | 0.11.4 | 0.11.8 | Andreas Tille,Michael R. Crusoe,Steffen Moeller | Michael R. Crusoe | 2020-02-14 13:04:26+00
libjloda-java | 0.0+git20180523.cbaf6d1 | 0.0+git20200409.de58067 | Andreas Tille | Andreas Tille | 2018-05-25 21:49:43+00
libmaus2 | 2.0.713 | 2.0.715 | Andreas Tille,Steffen Moeller | Andreas Tille | 2020-03-27 09:34:39+00
@@ -51,8 +50,6 @@ Last-Update: Wed, 15 Apr 2020 01:42:03 +0000
python-colormap | 1.0.2 | 1.0.3 | Andreas Tille | Andreas Tille | 2019-12-06 16:51:43+00
python-pbcore | 1.7.1+git20200313.41ba394 | 1.7.1+git20200408.0579ac1 | Andreas Tille | Steffen Moeller | 2020-03-21 19:39:08+00
python-xopen | 0.8.4 | 0.9.0 | Andreas Tille | Steffen Moeller | 2019-11-05 15:34:45+00
- q2-cutadapt | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:34:32+00
- q2-demux | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:34:40+00
q2templates | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-11-14 22:00:17+00
relion | 1.4 | 3.0.8 | Andreas Tille,Goswin von Brederlow,Navid Fehrenbacher,Roland Fehrenbacher | Andreas Tille | 2018-06-14 12:49:40+00
resfinder-db | 0.0+git20191001.149209d | 0.0+git20200408.0322c0d | Andreas Tille | Andreas Tille | 2019-11-16 23:00:12+00
@@ -64,9 +61,8 @@ Last-Update: Wed, 15 Apr 2020 01:42:03 +0000
t-coffee | 12.00.7fb08c2 | 13.41.0.28bdc39 | Andreas Tille,Steffen Moeller | Andreas Tille | 2019-02-15 07:57:10+00
tnseq-transit | 3.0.2 | 3.1.0 | Andreas Tille | Steffen Moeller | 2020-01-18 22:25:05+00
unanimity | 3.3.0 | 4.2.0-1 | Afif Elghraoui,Andreas Tille | Adrian Bunk | 2019-02-06 07:34:42+00
- vsearch | 2.14.1 | 2.14.2 | Andreas Tille,Tim Booth | Andreas Tille | 2019-12-17 10:07:09+00
xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00
-(64 rows)
+(60 rows)
source | id | severity | title
@@ -173,6 +169,7 @@ Last-Update: Wed, 15 Apr 2020 01:42:03 +0000
metaphlan2-data | 839925 | important | metaphlan2-data: postinst deletes shipped file: /var/lib/metaphlan2-data/markers.fasta
mipe | 890788 | minor | mipe: Please provide autopkgtest
mriconvert | 617342 | normal | 32-bit multiframe image conversion ignores frames
+ mummer | 956746 | important | Perl compatibility error in mummerplot
ncbi-blast+ | 891197 | normal | Please switch to pcre2
ncbi-tools6 | 225651 | wishlist | ncbi-tools-x11: want Cn3D++
ncbi-vdb | 952623 | serious | sra-sdk: FTBFS: ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to `vdb_mbedtls_entropy_init'
@@ -182,6 +179,7 @@ Last-Update: Wed, 15 Apr 2020 01:42:03 +0000
nitime | 955103 | important | nitime: FTBFS with Sphinx 2.4: AttributeError: 'Sphinx' object has no attribute 'info'
nut-nutrition | 339838 | wishlist | nut-nutrition: Would like to record 'snacks' and change the number of meals
obitools | 935340 | normal | obitools: Port to Python3 needed
+ odil | 956749 | serious | odil: FTBFS on mips64el
opencfu | 922589 | serious | FTBFS against opencv 4.0.1 (exp)
openslide-python | 842150 | wishlist | RunningDeepZoomServerOnApache
opensurgsim | 912110 | important | opensurgsim FTBFS: test failures
@@ -261,5 +259,5 @@ Last-Update: Wed, 15 Apr 2020 01:42:03 +0000
xmedcon | 671828 | normal | xmedcon: Cannot open file with YBR photometric interpretation
xmedcon | 779707 | normal | Errors when reading dicomdir file: "No images found" / "Loading: DICM Error reading file"
xmedcon | 924017 | normal | desktop entry
-(190 rows)
+(192 rows)
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/4fb31f1045c1f7637b67d2a12b5961121662c980
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/4fb31f1045c1f7637b67d2a12b5961121662c980
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