Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
831d36b3 by Andreas Tille at 2020-04-29T01:45:33+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,109 +1,108 @@
-Last-Update: Tue, 28 Apr 2020 01:42:03 +0000
+Last-Update: Wed, 29 Apr 2020 01:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 173 | {covid-19,imaging} |
- orthanc | 94 | {covid-19,practice,imaging} |
- gdcm | 45 | {imaging-dev} |
- orthanc-wsi | 38 | {laboratory,practice,imaging,covid-19,his,oncology} |
- dicomscope | 32 | {imaging} |
- dicom3tools | 31 | {imaging} |
- htsjdk | 30 | {bio-dev} |
- dcm2niix | 29 | {imaging} |
- gdcm | 29 | {imaging,covid-19} |
+ orthanc | 93 | {covid-19,practice,imaging} |
+ gdcm | 46 | {imaging-dev} |
+ orthanc-wsi | 37 | {covid-19,imaging,practice,his,oncology,laboratory} |
+ dicomscope | 34 | {imaging} |
+ dicom3tools | 32 | {imaging} |
+ htsjdk | 32 | {bio-dev} |
+ dcm2niix | 30 | {imaging} |
+ gdcm | 29 | {covid-19,imaging} |
openslide | 19 | {imaging} |
- gnumed-server | 18 | {covid-19,practice} |
+ gnumed-server | 18 | {practice,covid-19} |
+ minc-tools | 18 | {imaging} |
pixelmed | 18 | {imaging} |
- king | 17 | {typesetting,imaging} |
- minc-tools | 17 | {imaging} |
+ king | 17 | {imaging,typesetting} |
hunspell-en-med | 16 | {tools} |
invesalius | 16 | {imaging} |
- ngs-sdk | 16 | {bio-dev} |
plastimatch | 16 | {imaging} |
+ ngs-sdk | 15 | {bio-dev} |
adun.app | 14 | {bio} |
- biosig4c++ | 14 | {imaging,physics} |
+ biosig4c++ | 14 | {physics,imaging} |
vtk-dicom | 14 | {imaging} |
- mia | 13 | {imaging} |
gasic | 11 | {bio,cloud} |
obitools | 11 | {bio} |
gdcm | 10 | {imaging-dev} |
+ insighttoolkit4 | 10 | {imaging-dev} |
jebl2 | 10 | {bio-dev} |
mipe | 9 | {cloud,bio} |
ncbi-entrez-direct | 9 | {bio} |
ngs-sdk | 9 | {bio-dev} |
parsnp | 9 | {bio} |
- tree-puzzle | 9 | {bio-phylogeny,cloud,bio} |
- ampliconnoise | 8 | {cloud,bio} |
+ tree-puzzle | 9 | {bio,cloud,bio-phylogeny} |
+ ampliconnoise | 8 | {bio,cloud} |
biojava-live | 8 | {bio-dev} |
ea-utils | 8 | {bio} |
- fitgcp | 8 | {bio,cloud} |
- insighttoolkit4 | 8 | {imaging-dev} |
+ fitgcp | 8 | {cloud,bio} |
melting | 8 | {bio,cloud} |
cgview | 7 | {bio} |
embassy-domainatrix | 7 | {cloud,bio} |
- fastlink | 7 | {bio,cloud} |
+ fastlink | 7 | {cloud,bio} |
jaligner | 7 | {bio} |
librg-utils-perl | 7 | {bio} |
paml | 7 | {bio} |
staden | 7 | {bio} |
alter-sequence-alignment | 6 | {bio} |
- anfo | 6 | {bio,cloud} |
- arden | 6 | {cloud,bio} |
+ arden | 6 | {bio,cloud} |
biomaj3-cli | 6 | {cloud} |
bppsuite | 6 | {bio} |
+ cluster3 | 6 | {bio} |
codonw | 6 | {bio} |
dazzdb | 6 | {bio} |
- diamond-aligner | 6 | {bio,covid-19} |
ecopcr | 6 | {bio} |
edtsurf | 6 | {bio} |
- embassy-domalign | 6 | {cloud,bio} |
+ embassy-domalign | 6 | {bio,cloud} |
embassy-domsearch | 6 | {bio,cloud} |
- freebayes | 6 | {bio} |
- freecontact | 6 | {cloud,bio} |
+ freecontact | 6 | {bio,cloud} |
indelible | 6 | {bio} |
king-probe | 6 | {bio} |
libminc | 6 | {imaging-dev} |
libncl | 6 | {bio} |
maqview | 6 | {bio} |
- mrs | 6 | {bio} |
ncbi-seg | 6 | {bio} |
- neobio | 6 | {cloud,bio} |
+ neobio | 6 | {bio,cloud} |
norsp | 6 | {bio} |
phast | 6 | {bio} |
piler | 6 | {bio} |
- prime-phylo | 6 | {cloud,bio} |
+ prime-phylo | 6 | {bio,cloud} |
pymia | 6 | {imaging-dev} |
rambo-k | 6 | {bio} |
salmon | 6 | {bio} |
seer | 6 | {bio} |
seqsero | 6 | {bio} |
sibsim4 | 6 | {cloud,bio} |
- sigma-align | 6 | {bio,cloud,bio-phylogeny} |
+ sigma-align | 6 | {bio,bio-phylogeny,cloud} |
spread-phy | 6 | {bio,bio-phylogeny} |
- squizz | 6 | {bio,cloud} |
+ squizz | 6 | {cloud,bio} |
+ anfo | 5 | {cloud,bio} |
beads | 5 | {bio} |
biomaj3-daemon | 5 | {bio} |
bio-rainbow | 5 | {bio} |
- bio-tradis | 5 | {bio-dev,bio} |
+ bio-tradis | 5 | {bio,bio-dev} |
bitseq | 5 | {bio} |
centrifuge | 5 | {bio} |
clonalorigin | 5 | {bio} |
- cluster3 | 5 | {bio} |
daligner | 5 | {bio-ngs,bio} |
- delly | 5 | {covid-19,bio} |
+ delly | 5 | {bio,covid-19} |
+ diamond-aligner | 5 | {bio,covid-19} |
+ freebayes | 5 | {bio} |
gatb-core | 5 | {bio} |
harvest-tools | 5 | {bio} |
jellyfish1 | 5 | {bio} |
lagan | 5 | {bio} |
mapsembler2 | 5 | {bio,cloud} |
- mhap | 5 | {bio-ngs,bio} |
+ mhap | 5 | {bio,bio-ngs} |
microbegps | 5 | {bio} |
- paraclu | 5 | {bio,cloud} |
+ mrs | 5 | {bio} |
+ paraclu | 5 | {cloud,bio} |
phybin | 5 | {bio} |
- phyutility | 5 | {bio,cloud} |
+ phyutility | 5 | {cloud,bio} |
placnet | 5 | {bio} |
predictprotein | 5 | {bio} |
- probabel | 5 | {cloud,bio} |
+ probabel | 5 | {bio,cloud} |
pscan-tfbs | 5 | {bio} |
psychopy | 5 | {psychology} |
radiant | 5 | {bio} |
@@ -115,15 +114,15 @@ Last-Update: Tue, 28 Apr 2020 01:42:03 +0000
sickle | 5 | {bio} |
transrate-tools | 5 | {bio} |
transtermhp | 5 | {bio} |
- treeview | 5 | {bio-phylogeny,bio} |
- zalign | 5 | {cloud,bio} |
- abacas | 4 | {covid-19,bio} |
+ treeview | 5 | {bio,bio-phylogeny} |
+ zalign | 5 | {bio,cloud} |
+ abacas | 4 | {bio,covid-19} |
assemblytics | 4 | {bio} |
baitfisher | 4 | {bio} |
bandage | 4 | {bio} |
- beast-mcmc | 4 | {bio-phylogeny,bio} |
+ beast-mcmc | 4 | {bio,bio-phylogeny} |
brig | 4 | {bio} |
- clonalframeml | 4 | {bio,covid-19} |
+ clonalframeml | 4 | {covid-19,bio} |
dascrubber | 4 | {bio} |
dicompyler | 4 | {oncology} |
dindel | 4 | {bio} |
@@ -145,7 +144,7 @@ Last-Update: Tue, 28 Apr 2020 01:42:03 +0000
perm | 4 | {bio,cloud} |
poretools | 4 | {bio} |
proalign | 4 | {bio-phylogeny,bio} |
- prottest | 4 | {bio,bio-phylogeny} |
+ prottest | 4 | {bio-phylogeny,bio} |
pscan-chip | 4 | {bio} |
rdp-classifier | 4 | {bio} |
relion | 4 | {bio} |
@@ -178,11 +177,11 @@ Last-Update: Tue, 28 Apr 2020 01:42:03 +0000
qcumber | 3 | {bio} |
qrisk2 | 3 | {practice} |
quorum | 3 | {bio} |
- rtax | 3 | {cloud,bio} |
+ rtax | 3 | {bio,cloud} |
runcircos-gui | 3 | {bio} |
samblaster | 3 | {covid-19,bio} |
scrm | 3 | {bio} |
- seqmagick | 3 | {bio,covid-19} |
+ seqmagick | 3 | {covid-19,bio} |
snap-aligner | 3 | {bio} |
soapaligner | 3 | {bio} |
spaced | 3 | {bio} |
@@ -192,10 +191,10 @@ Last-Update: Tue, 28 Apr 2020 01:42:03 +0000
vsearch | 3 | {bio} |
yaha | 3 | {bio} |
beast2-mcmc | 2 | {bio} |
- biosig4c++ | 2 | {physics,imaging-dev} |
biosig4c++ | 2 | {imaging-dev,physics} |
+ biosig4c++ | 2 | {physics,imaging-dev} |
ctn | 2 | {imaging-dev} |
- cufflinks | 2 | {bio,cloud} |
+ cufflinks | 2 | {cloud,bio} |
elastix | 2 | {imaging} |
getdata | 2 | {bio} |
libvistaio | 2 | {imaging-dev} |
@@ -208,14 +207,14 @@ Last-Update: Tue, 28 Apr 2020 01:42:03 +0000
rampler | 2 | {bio} |
skesa | 2 | {bio} |
srf | 2 | {bio-dev} |
- stringtie | 2 | {bio,covid-19} |
+ stringtie | 2 | {covid-19,bio} |
sweed | 2 | {bio} |
tvc | 2 | {bio} |
- varscan | 2 | {covid-19,bio} |
+ varscan | 2 | {bio,covid-19} |
velvetoptimiser | 2 | {bio} |
atropos | 1 | {bio} |
- biobambam2 | 1 | {bio,covid-19,bio-dev} |
- blasr | 1 | {bio,bio-ngs} |
+ biobambam2 | 1 | {bio-dev,bio,covid-19} |
+ blasr | 1 | {bio-ngs,bio} |
blimps | 1 | {bio} |
embassy-phylip | 1 | {bio,cloud} |
emboss-explorer | 1 | {bio} |
@@ -226,7 +225,7 @@ Last-Update: Tue, 28 Apr 2020 01:42:03 +0000
libxdf | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
orthanc-postgresql | 1 | {imaging} |
- oscar | 1 | {tools,data,practice} |
+ oscar | 1 | {data,tools,practice} |
papyrus | 1 | {imaging-dev} |
pbdagcon | 1 | {bio} |
pilercr | 1 | {bio} |
@@ -240,7 +239,7 @@ Last-Update: Tue, 28 Apr 2020 01:42:03 +0000
simpleitk | 1 | {imaging-dev} |
spaln | 1 | {covid-19,bio} |
trace2dbest | 1 | {bio} |
- tree-puzzle | 1 | {cloud,bio-phylogeny,bio} |
+ tree-puzzle | 1 | {bio-phylogeny,cloud,bio} |
volpack | 1 | {imaging-dev} |
acedb | 0 | {cloud,bio} |
augur | 0 | {bio,covid-19} |
@@ -254,7 +253,7 @@ Last-Update: Tue, 28 Apr 2020 01:42:03 +0000
fis-gtm | 0 | {his} |
freecontact | 0 | {bio-dev} |
gatb-core | 0 | {bio-dev} |
- htscodecs | 0 | {covid-19,bio-dev} |
+ htscodecs | 0 | {bio-dev,covid-19} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
libbio-mage-utils-perl | 0 | {bio-dev} |
@@ -272,7 +271,7 @@ Last-Update: Tue, 28 Apr 2020 01:42:03 +0000
libhmsbeagle | 0 | {bio-dev} |
libics | 0 | {covid-19,imaging-dev} |
libjloda-java | 0 | {bio-dev} |
- libmaus2 | 0 | {bio-dev,covid-19} |
+ libmaus2 | 0 | {covid-19,bio-dev} |
libmems | 0 | {bio-dev} |
libmuscle | 0 | {bio-dev} |
libncl | 0 | {bio-dev} |
@@ -283,19 +282,18 @@ Last-Update: Tue, 28 Apr 2020 01:42:03 +0000
libstatgen | 0 | {bio-dev} |
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
- mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
milib | 0 | {bio-dev,covid-19} |
mssstest | 0 | {tools} |
- multiqc | 0 | {covid-19,bio} |
+ multiqc | 0 | {bio,covid-19} |
murasaki | 0 | {bio} |
ncbi-vdb | 0 | {bio-dev} |
opencfu | 0 | {laboratory} |
orthanc-imagej | 0 | {imaging} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
- relion | 0 | {bio-dev} |
relion | 0 | {bio} |
+ relion | 0 | {bio-dev} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
@@ -307,5 +305,5 @@ Last-Update: Tue, 28 Apr 2020 01:42:03 +0000
vtk-dicom | 0 | {imaging-dev} |
wtdbg2 | 0 | {covid-19} |
bustools | -1 | {bio} |
-(334 rows)
+(332 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/831d36b34f8412ef68b60028d818476db99b8ac2
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/831d36b34f8412ef68b60028d818476db99b8ac2
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