Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
d63557df by Andreas Tille at 2020-04-29T13:45:15+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,13 +1,13 @@
-Last-Update: Wed, 29 Apr 2020 01:42:04 +0000
+Last-Update: Wed, 29 Apr 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 173 | {covid-19,imaging} |
- orthanc | 93 | {covid-19,practice,imaging} |
- gdcm | 46 | {imaging-dev} |
- orthanc-wsi | 37 | {covid-19,imaging,practice,his,oncology,laboratory} |
- dicomscope | 34 | {imaging} |
- dicom3tools | 32 | {imaging} |
+ dcmtk | 177 | {covid-19,imaging} |
+ orthanc | 94 | {imaging,practice,covid-19} |
+ gdcm | 49 | {imaging-dev} |
+ orthanc-wsi | 38 | {his,covid-19,practice,oncology,imaging,laboratory} |
+ dicomscope | 36 | {imaging} |
+ dicom3tools | 33 | {imaging} |
htsjdk | 32 | {bio-dev} |
dcm2niix | 30 | {imaging} |
gdcm | 29 | {covid-19,imaging} |
@@ -15,46 +15,47 @@ Last-Update: Wed, 29 Apr 2020 01:42:04 +0000
gnumed-server | 18 | {practice,covid-19} |
minc-tools | 18 | {imaging} |
pixelmed | 18 | {imaging} |
+ invesalius | 17 | {imaging} |
king | 17 | {imaging,typesetting} |
hunspell-en-med | 16 | {tools} |
- invesalius | 16 | {imaging} |
+ ngs-sdk | 16 | {bio-dev} |
plastimatch | 16 | {imaging} |
- ngs-sdk | 15 | {bio-dev} |
adun.app | 14 | {bio} |
biosig4c++ | 14 | {physics,imaging} |
vtk-dicom | 14 | {imaging} |
- gasic | 11 | {bio,cloud} |
- obitools | 11 | {bio} |
- gdcm | 10 | {imaging-dev} |
+ obitools | 12 | {bio} |
+ gasic | 11 | {cloud,bio} |
+ gdcm | 11 | {imaging-dev} |
insighttoolkit4 | 10 | {imaging-dev} |
jebl2 | 10 | {bio-dev} |
+ ngs-sdk | 10 | {bio-dev} |
+ biojava-live | 9 | {bio-dev} |
mipe | 9 | {cloud,bio} |
ncbi-entrez-direct | 9 | {bio} |
- ngs-sdk | 9 | {bio-dev} |
parsnp | 9 | {bio} |
- tree-puzzle | 9 | {bio,cloud,bio-phylogeny} |
- ampliconnoise | 8 | {bio,cloud} |
- biojava-live | 8 | {bio-dev} |
+ tree-puzzle | 9 | {bio-phylogeny,cloud,bio} |
+ ampliconnoise | 8 | {cloud,bio} |
ea-utils | 8 | {bio} |
- fitgcp | 8 | {cloud,bio} |
+ fitgcp | 8 | {bio,cloud} |
+ librg-utils-perl | 8 | {bio} |
melting | 8 | {bio,cloud} |
cgview | 7 | {bio} |
embassy-domainatrix | 7 | {cloud,bio} |
- fastlink | 7 | {cloud,bio} |
+ fastlink | 7 | {bio,cloud} |
jaligner | 7 | {bio} |
- librg-utils-perl | 7 | {bio} |
paml | 7 | {bio} |
staden | 7 | {bio} |
alter-sequence-alignment | 6 | {bio} |
- arden | 6 | {bio,cloud} |
+ arden | 6 | {cloud,bio} |
biomaj3-cli | 6 | {cloud} |
+ bio-tradis | 6 | {bio-dev,bio} |
bppsuite | 6 | {bio} |
cluster3 | 6 | {bio} |
codonw | 6 | {bio} |
dazzdb | 6 | {bio} |
ecopcr | 6 | {bio} |
edtsurf | 6 | {bio} |
- embassy-domalign | 6 | {bio,cloud} |
+ embassy-domalign | 6 | {cloud,bio} |
embassy-domsearch | 6 | {bio,cloud} |
freecontact | 6 | {bio,cloud} |
indelible | 6 | {bio} |
@@ -69,43 +70,41 @@ Last-Update: Wed, 29 Apr 2020 01:42:04 +0000
piler | 6 | {bio} |
prime-phylo | 6 | {bio,cloud} |
pymia | 6 | {imaging-dev} |
+ radiant | 6 | {bio} |
rambo-k | 6 | {bio} |
salmon | 6 | {bio} |
seer | 6 | {bio} |
seqsero | 6 | {bio} |
- sibsim4 | 6 | {cloud,bio} |
- sigma-align | 6 | {bio,bio-phylogeny,cloud} |
- spread-phy | 6 | {bio,bio-phylogeny} |
+ sibsim4 | 6 | {bio,cloud} |
+ sigma-align | 6 | {cloud,bio,bio-phylogeny} |
+ spread-phy | 6 | {bio-phylogeny,bio} |
squizz | 6 | {cloud,bio} |
anfo | 5 | {cloud,bio} |
beads | 5 | {bio} |
biomaj3-daemon | 5 | {bio} |
bio-rainbow | 5 | {bio} |
- bio-tradis | 5 | {bio,bio-dev} |
bitseq | 5 | {bio} |
centrifuge | 5 | {bio} |
clonalorigin | 5 | {bio} |
- daligner | 5 | {bio-ngs,bio} |
- delly | 5 | {bio,covid-19} |
- diamond-aligner | 5 | {bio,covid-19} |
+ daligner | 5 | {bio,bio-ngs} |
+ delly | 5 | {covid-19,bio} |
freebayes | 5 | {bio} |
gatb-core | 5 | {bio} |
harvest-tools | 5 | {bio} |
jellyfish1 | 5 | {bio} |
lagan | 5 | {bio} |
mapsembler2 | 5 | {bio,cloud} |
- mhap | 5 | {bio,bio-ngs} |
+ mhap | 5 | {bio-ngs,bio} |
microbegps | 5 | {bio} |
mrs | 5 | {bio} |
- paraclu | 5 | {cloud,bio} |
+ paraclu | 5 | {bio,cloud} |
phybin | 5 | {bio} |
- phyutility | 5 | {cloud,bio} |
+ phyutility | 5 | {bio,cloud} |
placnet | 5 | {bio} |
predictprotein | 5 | {bio} |
probabel | 5 | {bio,cloud} |
pscan-tfbs | 5 | {bio} |
psychopy | 5 | {psychology} |
- radiant | 5 | {bio} |
rdp-alignment | 5 | {bio} |
rdp-readseq | 5 | {bio} |
repeatmasker-recon | 5 | {bio} |
@@ -120,7 +119,7 @@ Last-Update: Wed, 29 Apr 2020 01:42:04 +0000
assemblytics | 4 | {bio} |
baitfisher | 4 | {bio} |
bandage | 4 | {bio} |
- beast-mcmc | 4 | {bio,bio-phylogeny} |
+ beast-mcmc | 4 | {bio-phylogeny,bio} |
brig | 4 | {bio} |
clonalframeml | 4 | {covid-19,bio} |
dascrubber | 4 | {bio} |
@@ -141,9 +140,9 @@ Last-Update: Wed, 29 Apr 2020 01:42:04 +0000
murasaki | 4 | {bio} |
nutsqlite | 4 | {tools} |
orthanc-webviewer | 4 | {imaging} |
- perm | 4 | {bio,cloud} |
+ perm | 4 | {cloud,bio} |
poretools | 4 | {bio} |
- proalign | 4 | {bio-phylogeny,bio} |
+ proalign | 4 | {bio,bio-phylogeny} |
prottest | 4 | {bio-phylogeny,bio} |
pscan-chip | 4 | {bio} |
rdp-classifier | 4 | {bio} |
@@ -152,9 +151,10 @@ Last-Update: Wed, 29 Apr 2020 01:42:04 +0000
scythe | 4 | {bio} |
segemehl | 4 | {bio} |
sga | 4 | {bio} |
+ soapaligner | 4 | {bio} |
soapsnp | 4 | {bio} |
sprai | 4 | {bio} |
- tnseq-transit | 4 | {covid-19,bio} |
+ tnseq-transit | 4 | {bio,covid-19} |
tracetuner | 4 | {bio} |
bart-view | 3 | {imaging} |
canu | 3 | {bio} |
@@ -168,9 +168,10 @@ Last-Update: Wed, 29 Apr 2020 01:42:04 +0000
libgff | 3 | {bio-dev} |
maffilter | 3 | {bio} |
metaphlan2 | 3 | {bio} |
- mlv-smile | 3 | {cloud,bio} |
+ mlv-smile | 3 | {bio,cloud} |
mptp | 3 | {bio} |
- orthanc-dicomweb | 3 | {covid-19,imaging} |
+ openslide | 3 | {imaging-dev} |
+ orthanc-dicomweb | 3 | {imaging,covid-19} |
orthanc-mysql | 3 | {imaging} |
patman | 3 | {bio} |
pilon | 3 | {bio} |
@@ -181,29 +182,28 @@ Last-Update: Wed, 29 Apr 2020 01:42:04 +0000
runcircos-gui | 3 | {bio} |
samblaster | 3 | {covid-19,bio} |
scrm | 3 | {bio} |
- seqmagick | 3 | {covid-19,bio} |
+ seqmagick | 3 | {bio,covid-19} |
snap-aligner | 3 | {bio} |
- soapaligner | 3 | {bio} |
spaced | 3 | {bio} |
stacks | 3 | {bio} |
suitename | 3 | {bio} |
surankco | 3 | {bio} |
+ velvetoptimiser | 3 | {bio} |
vsearch | 3 | {bio} |
yaha | 3 | {bio} |
beast2-mcmc | 2 | {bio} |
biosig4c++ | 2 | {imaging-dev,physics} |
- biosig4c++ | 2 | {physics,imaging-dev} |
ctn | 2 | {imaging-dev} |
- cufflinks | 2 | {cloud,bio} |
+ cufflinks | 2 | {bio,cloud} |
elastix | 2 | {imaging} |
getdata | 2 | {bio} |
libvistaio | 2 | {imaging-dev} |
logol | 2 | {bio} |
nanook | 2 | {bio} |
ngs-sdk | 2 | {bio-dev} |
- openslide | 2 | {imaging-dev} |
pal2nal | 2 | {bio} |
phipack | 2 | {bio} |
+ python-scitrack | 2 | {covid-19} |
rampler | 2 | {bio} |
skesa | 2 | {bio} |
srf | 2 | {bio-dev} |
@@ -211,13 +211,13 @@ Last-Update: Wed, 29 Apr 2020 01:42:04 +0000
sweed | 2 | {bio} |
tvc | 2 | {bio} |
varscan | 2 | {bio,covid-19} |
- velvetoptimiser | 2 | {bio} |
atropos | 1 | {bio} |
- biobambam2 | 1 | {bio-dev,bio,covid-19} |
+ biobambam2 | 1 | {bio-dev,covid-19,bio} |
blasr | 1 | {bio-ngs,bio} |
blimps | 1 | {bio} |
embassy-phylip | 1 | {bio,cloud} |
emboss-explorer | 1 | {bio} |
+ libbio-mage-utils-perl | 1 | {bio-dev} |
libchado-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
libmialm | 1 | {imaging-dev} |
@@ -230,19 +230,18 @@ Last-Update: Wed, 29 Apr 2020 01:42:04 +0000
pbdagcon | 1 | {bio} |
pilercr | 1 | {bio} |
plasmidseeker | 1 | {bio} |
- python-py2bit | 1 | {bio-dev,bio} |
- python-scitrack | 1 | {covid-19} |
+ python-py2bit | 1 | {bio,bio-dev} |
relion | 1 | {bio} |
samtools-legacy | 1 | {bio-dev} |
seqan | 1 | {bio-dev} |
sift | 1 | {bio} |
simpleitk | 1 | {imaging-dev} |
- spaln | 1 | {covid-19,bio} |
+ spaln | 1 | {bio,covid-19} |
trace2dbest | 1 | {bio} |
tree-puzzle | 1 | {bio-phylogeny,cloud,bio} |
volpack | 1 | {imaging-dev} |
acedb | 0 | {cloud,bio} |
- augur | 0 | {bio,covid-19} |
+ augur | 0 | {covid-19,bio} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {covid-19} |
biojava4-live | 0 | {bio-dev} |
@@ -253,10 +252,9 @@ Last-Update: Wed, 29 Apr 2020 01:42:04 +0000
fis-gtm | 0 | {his} |
freecontact | 0 | {bio-dev} |
gatb-core | 0 | {bio-dev} |
- htscodecs | 0 | {bio-dev,covid-19} |
+ htscodecs | 0 | {covid-19,bio-dev} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
- libbio-mage-utils-perl | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
libbpp-core | 0 | {bio-dev} |
libbpp-phyl | 0 | {bio-dev} |
@@ -292,8 +290,8 @@ Last-Update: Wed, 29 Apr 2020 01:42:04 +0000
orthanc-imagej | 0 | {imaging} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
- relion | 0 | {bio} |
relion | 0 | {bio-dev} |
+ relion | 0 | {bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
@@ -305,5 +303,5 @@ Last-Update: Wed, 29 Apr 2020 01:42:04 +0000
vtk-dicom | 0 | {imaging-dev} |
wtdbg2 | 0 | {covid-19} |
bustools | -1 | {bio} |
-(332 rows)
+(330 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d63557df431dec2a69f59633fd603f25cb338b8c
--
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