[med-svn] [Git][med-team/libgoby-java][master] 9 commits: Adding excluded dirs in debian/copyright

[Pierre Gruet]

Pierre Gruet pushed to branch master at Debian Med / libgoby-java


Commits:
6f51bc50 by Pierre Gruet at 2020-08-21T23:23:56+02:00
Adding excluded dirs in debian/copyright

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8c9c3364 by Pierre Gruet at 2020-08-21T23:24:36+02:00
Depending on debhelper-compat

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ea053fd1 by Pierre Gruet at 2020-08-21T23:25:04+02:00
Bumping Standards version to 4.5.0 (Rules-Requires-Root field)

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ebf8a932 by Pierre Gruet at 2020-08-22T07:44:47+02:00
New upstream version 3.3.1+dfsg
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83f2dbd3 by Pierre Gruet at 2020-08-22T07:57:27+02:00
Update upstream source from tag 'upstream/3.3.1+dfsg'

Update to upstream version '3.3.1+dfsg'
with Debian dir c5428e2f9614511c081c99dc93ef7b1e740a3f73
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23219b0c by Pierre Gruet at 2020-08-24T11:51:17+02:00
Building with Maven

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33a817ec by Pierre Gruet at 2020-08-24T11:51:56+02:00
Using the Debian-packaged protoc compiler in goby-io/pom.xml

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2946552b by Pierre Gruet at 2020-08-24T11:52:19+02:00
Adding missing dependencies in goby-io/pom.xml

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e007855a by Pierre Gruet at 2020-08-24T11:52:35+02:00
Writing TODO

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30 changed files:

- + .gitattributes
- + .gitignore
- + .gitmodules
- CHANGES.txt
- + bin/evaluate-genotypes-ssi-keras.sh
- + bin/goby-python-with-path.sh
- + buildsupport/.gitattributes
- debian/changelog
- − debian/compat
- debian/control
- debian/copyright
- + debian/libgoby-java.poms
- + debian/maven.ignoreRules
- + debian/maven.rules
- + debian/patches/adding_dependencies.patch
- + debian/patches/protoc.patch
- + debian/patches/series
- debian/rules
- goby-distribution/data/reference/mm9/chr1.fa.gz
- + goby-distribution/data/reference/test-cases-variations/test-case-references.fasta
- + goby-distribution/data/snps/sample-mouse.tsv
- + goby-distribution/goby-distribution.iml
- + goby-distribution/pom.xml
- + goby-distribution/src/main/java/org/campagnelab/goby/GobyVersion.java
- + goby-distribution/src/main/java/org/campagnelab/goby/R/FisherExact.java
- + goby-distribution/src/main/java/org/campagnelab/goby/R/GobyRengine.java
- + goby-distribution/src/main/java/org/campagnelab/goby/R/RConsoleMainLoopCallback.java
- + goby-distribution/src/main/java/org/campagnelab/goby/R/RLoggerMainLoopCallback.java
- + goby-distribution/src/main/java/org/campagnelab/goby/R/package.html
- + goby-distribution/src/main/java/org/campagnelab/goby/Release1_9_7_2.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/libgoby-java/-/compare/d1093aa6c37869c007c2b5e8d0eb1c7282918226...e007855ad41bb8220531536dc66c3e679a17df41

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View it on GitLab: https://salsa.debian.org/med-team/libgoby-java/-/compare/d1093aa6c37869c007c2b5e8d0eb1c7282918226...e007855ad41bb8220531536dc66c3e679a17df41
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