[med-svn] [Git][med-team/libgoby-java][upstream] New upstream version 3.3.1+dfsg

[Pierre Gruet]

Pierre Gruet pushed to branch upstream at Debian Med / libgoby-java


Commits:
ebf8a932 by Pierre Gruet at 2020-08-22T07:44:47+02:00
New upstream version 3.3.1+dfsg
- - - - -


30 changed files:

- + .gitattributes
- + .gitignore
- + .gitmodules
- CHANGES.txt
- + bin/evaluate-genotypes-ssi-keras.sh
- + bin/goby-python-with-path.sh
- + buildsupport/.gitattributes
- goby-distribution/data/reference/mm9/chr1.fa.gz
- + goby-distribution/data/reference/test-cases-variations/test-case-references.fasta
- + goby-distribution/data/snps/sample-mouse.tsv
- + goby-distribution/goby-distribution.iml
- + goby-distribution/pom.xml
- + goby-distribution/src/main/java/org/campagnelab/goby/GobyVersion.java
- + goby-distribution/src/main/java/org/campagnelab/goby/R/FisherExact.java
- + goby-distribution/src/main/java/org/campagnelab/goby/R/GobyRengine.java
- + goby-distribution/src/main/java/org/campagnelab/goby/R/RConsoleMainLoopCallback.java
- + goby-distribution/src/main/java/org/campagnelab/goby/R/RLoggerMainLoopCallback.java
- + goby-distribution/src/main/java/org/campagnelab/goby/R/package.html
- + goby-distribution/src/main/java/org/campagnelab/goby/Release1_9_7_2.java
- + goby-distribution/src/main/java/org/campagnelab/goby/algorithmic/algorithm/ATGCCorrectionWeight.java
- + goby-distribution/src/main/java/org/campagnelab/goby/algorithmic/algorithm/ATProportionWeight.java
- + goby-distribution/src/main/java/org/campagnelab/goby/algorithmic/algorithm/AnnotationCount.java
- + goby-distribution/src/main/java/org/campagnelab/goby/algorithmic/algorithm/AnnotationCountInterface.java
- + goby-distribution/src/main/java/org/campagnelab/goby/algorithmic/algorithm/AnnotationCountIterateAlignments.java
- + goby-distribution/src/main/java/org/campagnelab/goby/algorithmic/algorithm/AnnotationWeightCount.java
- + goby-distribution/src/main/java/org/campagnelab/goby/algorithmic/algorithm/BaseProportionWeight.java
- + goby-distribution/src/main/java/org/campagnelab/goby/algorithmic/algorithm/ComputeCount.java
- + goby-distribution/src/main/java/org/campagnelab/goby/algorithmic/algorithm/ComputeCountInterface.java
- + goby-distribution/src/main/java/org/campagnelab/goby/algorithmic/algorithm/ComputeStartCount.java
- + goby-distribution/src/main/java/org/campagnelab/goby/algorithmic/algorithm/ComputeWeightCount.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/libgoby-java/-/commit/ebf8a932ed54cb2a1e044619277f78b5a9548d4c

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View it on GitLab: https://salsa.debian.org/med-team/libgoby-java/-/commit/ebf8a932ed54cb2a1e044619277f78b5a9548d4c
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