[med-svn] [Git][med-team/toil][master] 8 commits: New upstream version 4.2.0

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / toil


Commits:
3840d76f by Michael R. Crusoe at 2020-08-27T10:10:55+02:00
New upstream version 4.2.0
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73c30385 by Michael R. Crusoe at 2020-08-27T10:10:55+02:00
routine-update: New upstream version

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1fdd0cac by Michael R. Crusoe at 2020-08-27T10:11:01+02:00
Update upstream source from tag 'upstream/4.2.0'

Update to upstream version '4.2.0'
with Debian dir 0d729c6925b479dbff7406658935c3121a7071be
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658537e4 by Michael R. Crusoe at 2020-08-27T10:33:39+02:00
Remove unneeded no_virtualenv_to_create_manpages.patch; freshen remaining patches.

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f6d0d168 by Michael R. Crusoe at 2020-08-27T10:45:00+02:00
debian/tests/control: 'superficial' is a restriction, not a feature

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c6de115a by Michael R. Crusoe at 2020-08-27T10:46:21+02:00
Quiet a lintian false positive for repeated-path-segment

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c1271262 by Michael R. Crusoe at 2020-08-27T11:23:36+02:00
bump minimum cwltool version

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453cb8cc by Michael R. Crusoe at 2020-08-27T11:26:54+02:00
release 4.2.0-1

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30 changed files:

- .gitlab-ci.yml
- README.rst
- debian/changelog
- debian/control
- debian/patches/no_galaxy_lib
- − debian/patches/no_virtualenv_to_create_manpages.patch
- debian/patches/remove-pathlib2-dep
- debian/patches/series
- debian/patches/setting_version.patch
- debian/patches/soften-mesos-deps
- debian/patches/version.patch
- debian/tests/control
- + debian/toil.lintian-overrides
- docs/conf.py
- docs/running/cliOptions.rst
- docs/running/cloud/amazon.rst
- docs/running/cloud/cloud.rst
- docs/running/cloud/clusterUtils.rst
- + docs/running/cloud/kubernetes.rst
- setup.py
- src/toil/__init__.py
- src/toil/batchSystems/kubernetes.py
- src/toil/batchSystems/lsf.py
- src/toil/batchSystems/lsfHelper.py
- src/toil/batchSystems/mesos/executor.py
- src/toil/batchSystems/singleMachine.py
- src/toil/batchSystems/slurm.py
- src/toil/common.py
- src/toil/cwl/cwltoil.py
- src/toil/deferred.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/toil/-/compare/6d0ac66061c32bb9566797abec4ef5ed775f06e6...453cb8cc3b0578e30a71537ba3bca311d714fd53

-- 
View it on GitLab: https://salsa.debian.org/med-team/toil/-/compare/6d0ac66061c32bb9566797abec4ef5ed775f06e6...453cb8cc3b0578e30a71537ba3bca311d714fd53
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