[med-svn] [Git][med-team/smrtanalysis][master] 10 commits: Afif removed himself from Uploaders, Add myself to Uploaders
Andreas Tille
gitlab at salsa.debian.org
Thu Feb 27 09:09:03 GMT 2020
Andreas Tille pushed to branch master at Debian Med / smrtanalysis
Commits:
90333c26 by Andreas Tille at 2020-02-27T10:02:02+01:00
Afif removed himself from Uploaders, Add myself to Uploaders
- - - - -
528b6597 by Andreas Tille at 2020-02-27T10:03:02+01:00
Move all packages affected by Python2 removal bugs to Suggests
- - - - -
e68ed3d5 by Andreas Tille at 2020-02-27T10:03:36+01:00
routine-update: Standards-Version: 4.5.0
- - - - -
6be50373 by Andreas Tille at 2020-02-27T10:03:36+01:00
routine-update: debhelper-compat 12
- - - - -
46fb2cc0 by Andreas Tille at 2020-02-27T10:03:46+01:00
R-U: Trailing whitespace in debian/copyright
- - - - -
9ab39513 by Andreas Tille at 2020-02-27T10:03:46+01:00
R-U: Trailing whitespace in debian/rules
- - - - -
d371347f by Andreas Tille at 2020-02-27T10:03:46+01:00
routine-update: Add salsa-ci file
- - - - -
ee67939b by Andreas Tille at 2020-02-27T10:03:50+01:00
Use secure URI in Homepage field.
Fixes: lintian: homepage-field-uses-insecure-uri
See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html
- - - - -
47385dd4 by Andreas Tille at 2020-02-27T10:03:51+01:00
Remove obsolete field Name from debian/upstream/metadata (already present in machine-readable debian/copyright).
- - - - -
ab80f3d0 by Andreas Tille at 2020-02-27T10:04:48+01:00
routine-update: Ready to upload to unstable
- - - - -
7 changed files:
- debian/changelog
- − debian/compat
- debian/control
- debian/copyright
- debian/rules
- + debian/salsa-ci.yml
- debian/upstream/metadata
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,20 @@
+smrtanalysis (0~20200227) unstable; urgency=medium
+
+ * Afif removed himself from Uploaders
+ * Add myself to Uploaders
+ * Move all packages affected by Python2 removal bugs to Suggests
+ Closes: #945737
+ * Standards-Version: 4.5.0 (routine-update)
+ * debhelper-compat 12 (routine-update)
+ * Remove trailing whitespace in debian/copyright (routine-update)
+ * Remove trailing whitespace in debian/rules (routine-update)
+ * Add salsa-ci file (routine-update)
+ * Use secure URI in Homepage field.
+ * Remove obsolete field Name from debian/upstream/metadata (already
+ present in machine-readable debian/copyright).
+
+ -- Andreas Tille <tille at debian.org> Thu, 27 Feb 2020 10:03:51 +0100
+
smrtanalysis (0~20180814) unstable; urgency=medium
* Team upload.
=====================================
debian/compat deleted
=====================================
@@ -1 +0,0 @@
-11
=====================================
debian/control
=====================================
@@ -1,25 +1,26 @@
Source: smrtanalysis
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
Section: science
Priority: optional
-Build-Depends: debhelper (>= 11~)
-Standards-Version: 4.2.0
+Build-Depends: debhelper-compat (= 12)
+Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/smrtanalysis
Vcs-Git: https://salsa.debian.org/med-team/smrtanalysis.git
-Homepage: http://www.pacb.com/products-and-services/analytical-software/smrt-analysis/
+Homepage: https://www.pacb.com/products-and-services/analytical-software/smrt-analysis/
Package: smrtanalysis
Architecture: all
Depends: ${misc:Depends},
pbbamtools,
- pbh5tools,
- pbbarcode,
- pbalign,
blasr,
- pbdagcon,
- pbgenomicconsensus,
- kineticstools,
- falcon
+ pbdagcon
+Suggests: pbh5tools,
+ pbbarcode,
+ pbalign,
+ pbgenomicconsensus,
+ kineticstools,
+ falcon
Description: software suite for single molecule, real-time sequencing
SMRT® Analysis is a powerful, open-source bioinformatics software suite
available for analysis of DNA sequencing data from Pacific Biosciences’
@@ -34,15 +35,15 @@ Package: smrtanalysis-dev
Architecture: all
Section: libdevel
Depends: ${misc:Depends},
- python-pbcore,
- python-pbcommand,
- python-pbconsensuscore | python3-pbconsensuscore,
- python-pbgenomicconsensus,
- python-pbh5tools,
- python-pbalign,
- python-kineticstools,
+ python3-pbcore,
+ python3-pbcommand,
+ python3-pbconsensuscore,
libpbseq-dev,
libpbbam-dev
+Suggests: python-pbgenomicconsensus,
+ python-pbh5tools,
+ python-pbalign,
+ python-kineticstools,
Description: develepment libraries for smrtanalysis
SMRT® Analysis is a powerful, open-source bioinformatics software suite
available for analysis of DNA sequencing data from Pacific Biosciences’
=====================================
debian/copyright
=====================================
@@ -19,13 +19,13 @@ License: BSD-3-Clause
without specific prior written permission.
.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
- ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
- LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
+ ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
+ LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE HOLDERS OR
- CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
- EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
- PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
- PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
- LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
- NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
+ CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
+ EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
+ PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
+ PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
+ LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
+ NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
=====================================
debian/rules
=====================================
@@ -3,4 +3,4 @@
#export DH_VERBOSE = 1
%:
- dh $@
+ dh $@
=====================================
debian/salsa-ci.yml
=====================================
@@ -0,0 +1,4 @@
+---
+include:
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml
=====================================
debian/upstream/metadata
=====================================
@@ -1,4 +1,3 @@
-Name: SMRT Analysis
Registry:
- Name: OMICtools
Entry: OMICS_05142
View it on GitLab: https://salsa.debian.org/med-team/smrtanalysis/-/compare/d25eddc1eecca4c414c5d74af2eb3602efabb1b5...ab80f3d091b34e5c08bcd3e0abb7673c9bb7606a
--
View it on GitLab: https://salsa.debian.org/med-team/smrtanalysis/-/compare/d25eddc1eecca4c414c5d74af2eb3602efabb1b5...ab80f3d091b34e5c08bcd3e0abb7673c9bb7606a
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