[med-svn] [Git][med-team/bbmap][master] 6 commits: routine-update: New upstream version

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / bbmap


Commits:
387e5503 by Andreas Tille at 2020-02-27T11:27:53+01:00
routine-update: New upstream version

- - - - -
7e91981b by Andreas Tille at 2020-02-27T11:27:55+01:00
New upstream version 38.79+dfsg
- - - - -
6676b63a by Andreas Tille at 2020-02-27T11:28:07+01:00
Update upstream source from tag 'upstream/38.79+dfsg'

Update to upstream version '38.79+dfsg'
with Debian dir 77a61c145ab2652f2f6088be08698f2aa7550b2d
- - - - -
ca80f045 by Andreas Tille at 2020-02-27T11:28:08+01:00
routine-update: Standards-Version: 4.5.0

- - - - -
01fe0066 by Andreas Tille at 2020-02-27T11:28:19+01:00
routine-update: Add salsa-ci file

- - - - -
092306bc by Andreas Tille at 2020-02-27T11:34:46+01:00
routine-update: Ready to upload to unstable

- - - - -


30 changed files:

- README.md
- addssu.sh
- + alltoall.sh
- + analyzesketchresults.sh
- bbmap.sh
- bbwrap.sh
- calcmem.sh
- callgenes.sh
- comparesketch.sh
- + comparessu.sh
- consensus.sh
- current/align2/AbstractMapper.java
- current/align2/BBMap.java
- current/align2/BBSplitter.java
- current/align2/BBWrap.java
- current/align2/RandomReads3.java
- current/pacbio/Aligner.java → current/aligner/Aligner.java
- current/prok/Alignment.java → current/aligner/Alignment.java
- current/pacbio/AlignmentResult.java → current/aligner/AlignmentResult.java
- + current/aligner/AllToAll.java
- current/pacbio/FlatAligner.java → current/aligner/FlatAligner.java
- current/pacbio/MultiStateAligner9PacBioAdapter.java → current/aligner/MultiStateAligner9PacBioAdapter.java
- current/pacbio/MultiStateAligner9PacBioAdapter2.java → current/aligner/MultiStateAligner9PacBioAdapter2.java
- current/pacbio/MultiStateAligner9PacBioAdapter3.java → current/aligner/MultiStateAligner9PacBioAdapter3.java
- current/pacbio/MultiStateAligner9PacBioAdapter_WithBarriers.java → current/aligner/MultiStateAligner9PacBioAdapter_WithBarriers.java
- current/pacbio/SingleStateAlignerFlat.java → current/aligner/SingleStateAlignerFlat.java
- current/pacbio/SingleStateAlignerFlat2.java → current/aligner/SingleStateAlignerFlat2.java
- current/pacbio/SingleStateAlignerFlat2Amino.java → current/aligner/SingleStateAlignerFlat2Amino.java
- current/pacbio/SingleStateAlignerFlat2_1D.java → current/aligner/SingleStateAlignerFlat2_1D.java
- + current/aligner/SingleStateAlignerFlat3.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bbmap/-/compare/258ce1dc979a313307ee93326ad8764f4d9c1902...092306bceed430b5cd31b75a754de5b7afd19825

-- 
View it on GitLab: https://salsa.debian.org/med-team/bbmap/-/compare/258ce1dc979a313307ee93326ad8764f4d9c1902...092306bceed430b5cd31b75a754de5b7afd19825
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20200227/d6aee5e2/attachment.html>