Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
4dd4ebed by Andreas Tille at 2020-03-03T13:44:25+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,24 +1,24 @@
-Last-Update: Tue, 03 Mar 2020 01:42:04 +0000
+Last-Update: Tue, 03 Mar 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------
- dcmtk | 172 | {imaging} |
- orthanc | 95 | {practice,imaging} |
- gdcm | 46 | {imaging-dev} |
+ dcmtk | 175 | {imaging} |
+ orthanc | 96 | {practice,imaging} |
+ gdcm | 44 | {imaging-dev} |
+ orthanc-wsi | 38 | {oncology,laboratory,imaging,his,practice} |
dcm2niix | 37 | {imaging} |
- orthanc-wsi | 37 | {oncology,imaging,his,laboratory,practice} |
- amide | 33 | {imaging} |
+ amide | 34 | {imaging} |
dicomscope | 27 | {imaging} |
medicalterms | 26 | {tools} |
- dicom3tools | 24 | {imaging} |
+ dicom3tools | 25 | {imaging} |
htsjdk | 23 | {bio-dev} |
gdcm | 17 | {imaging} |
- gnumed-server | 17 | {practice} |
- ngs-sdk | 13 | {bio-dev} |
+ gnumed-server | 16 | {practice} |
adun.app | 12 | {bio} |
invesalius | 12 | {imaging} |
+ minc-tools | 12 | {imaging} |
+ ngs-sdk | 12 | {bio-dev} |
pixelmed | 12 | {imaging} |
- minc-tools | 11 | {imaging} |
king | 10 | {imaging,typesetting} |
insighttoolkit4 | 9 | {imaging-dev} |
jebl2 | 9 | {bio-dev} |
@@ -30,44 +30,44 @@ Last-Update: Tue, 03 Mar 2020 01:42:04 +0000
obitools | 8 | {bio} |
plastimatch | 8 | {imaging} |
psychopy | 8 | {psychology} |
+ biosig4c++ | 7 | {imaging,physics} |
librg-utils-perl | 7 | {bio} |
ncbi-entrez-direct | 7 | {bio} |
arden | 6 | {cloud,bio} |
cgview | 6 | {bio} |
- fastlink | 6 | {bio,cloud} |
+ cluster3 | 6 | {bio} |
+ fastlink | 6 | {cloud,bio} |
maqview | 6 | {bio} |
melting | 6 | {bio,cloud} |
mipe | 6 | {bio,cloud} |
ngs-sdk | 6 | {bio-dev} |
openslide | 6 | {imaging} |
orthanc-webviewer | 6 | {imaging} |
- cluster3 | 5 | {bio} |
dazzdb | 5 | {bio} |
dicompyler | 5 | {oncology} |
embassy-domainatrix | 5 | {cloud,bio} |
lagan | 5 | {bio} |
ncbi-seg | 5 | {bio} |
norsp | 5 | {bio} |
- paml | 5 | {bio} |
+ openslide | 5 | {imaging-dev} |
radiant | 5 | {bio} |
sibsim4 | 5 | {cloud,bio} |
sigma-align | 5 | {bio-phylogeny,bio,cloud} |
- anfo | 4 | {bio,cloud} |
+ anfo | 4 | {cloud,bio} |
biomaj3-cli | 4 | {cloud} |
embassy-domalign | 4 | {bio,cloud} |
embassy-domsearch | 4 | {bio,cloud} |
estscan | 4 | {bio} |
- gasic | 4 | {bio,cloud} |
+ gasic | 4 | {cloud,bio} |
idba | 4 | {bio,cloud} |
ipig | 4 | {bio} |
jaligner | 4 | {bio} |
king-probe | 4 | {bio} |
libdivsufsort | 4 | {bio-dev} |
- mapsembler2 | 4 | {cloud,bio} |
- neobio | 4 | {bio,cloud} |
- nutsqlite | 4 | {tools} |
- openslide | 4 | {imaging-dev} |
+ mapsembler2 | 4 | {bio,cloud} |
+ neobio | 4 | {cloud,bio} |
orthanc-dicomweb | 4 | {imaging} |
+ paml | 4 | {bio} |
phyutility | 4 | {bio,cloud} |
piler | 4 | {bio} |
pymia | 4 | {imaging-dev} |
@@ -78,9 +78,9 @@ Last-Update: Tue, 03 Mar 2020 01:42:04 +0000
tracetuner | 4 | {bio} |
transtermhp | 4 | {bio} |
treeview | 4 | {bio-phylogeny,bio} |
- zalign | 4 | {bio,cloud} |
+ zalign | 4 | {cloud,bio} |
abacas | 3 | {bio} |
- ampliconnoise | 3 | {bio,cloud} |
+ ampliconnoise | 3 | {cloud,bio} |
assemblytics | 3 | {bio} |
bandage | 3 | {bio} |
biomaj3-daemon | 3 | {bio} |
@@ -88,11 +88,10 @@ Last-Update: Tue, 03 Mar 2020 01:42:04 +0000
bppsuite | 3 | {bio} |
brig | 3 | {bio} |
codonw | 3 | {bio} |
- diamond-aligner | 3 | {bio} |
ea-utils | 3 | {bio} |
ecopcr | 3 | {bio} |
edtsurf | 3 | {bio} |
- fitgcp | 3 | {cloud,bio} |
+ fitgcp | 3 | {bio,cloud} |
freecontact | 3 | {bio,cloud} |
getdata | 3 | {bio} |
ghmm | 3 | {bio} |
@@ -103,6 +102,7 @@ Last-Update: Tue, 03 Mar 2020 01:42:04 +0000
mauve-aligner | 3 | {bio} |
mlv-smile | 3 | {cloud,bio} |
mrs | 3 | {bio} |
+ nutsqlite | 3 | {tools} |
paraclu | 3 | {cloud,bio} |
parsnp | 3 | {bio} |
perm | 3 | {cloud,bio} |
@@ -131,20 +131,23 @@ Last-Update: Tue, 03 Mar 2020 01:42:04 +0000
baitfisher | 2 | {bio} |
bart-view | 2 | {imaging} |
beast2-mcmc | 2 | {bio} |
+ biosig4c++ | 2 | {physics,imaging-dev} |
bitseq | 2 | {bio} |
canu | 2 | {bio} |
centrifuge | 2 | {bio} |
clonalorigin | 2 | {bio} |
cufflinks | 2 | {bio,cloud} |
delly | 2 | {bio} |
+ diamond-aligner | 2 | {bio} |
elastix | 2 | {imaging} |
elph | 2 | {bio} |
gatb-core | 2 | {bio} |
harvest-tools | 2 | {bio} |
libgff | 2 | {bio-dev} |
+ libncl | 2 | {bio} |
librdp-taxonomy-tree-java | 2 | {bio-dev} |
lucy | 2 | {bio} |
- mhap | 2 | {bio,bio-ngs} |
+ mhap | 2 | {bio-ngs,bio} |
microbegps | 2 | {bio} |
murasaki | 2 | {bio} |
orthanc-mysql | 2 | {imaging} |
@@ -152,8 +155,8 @@ Last-Update: Tue, 03 Mar 2020 01:42:04 +0000
pbdagcon | 2 | {bio} |
pilon | 2 | {bio} |
placnet | 2 | {bio} |
- poretools | 2 | {bio} |
pscan-chip | 2 | {bio} |
+ qcumber | 2 | {bio} |
quorum | 2 | {bio} |
rambo-k | 2 | {bio} |
rampler | 2 | {bio} |
@@ -173,9 +176,10 @@ Last-Update: Tue, 03 Mar 2020 01:42:04 +0000
vsearch | 2 | {bio} |
atropos | 1 | {bio} |
beads | 1 | {bio} |
- beast-mcmc | 1 | {bio,bio-phylogeny} |
+ beast-mcmc | 1 | {bio-phylogeny,bio} |
bio-rainbow | 1 | {bio} |
- blasr | 1 | {bio,bio-ngs} |
+ biosig4c++ | 1 | {physics,imaging-dev} |
+ blasr | 1 | {bio-ngs,bio} |
blimps | 1 | {bio} |
clonalframeml | 1 | {bio} |
ctn | 1 | {imaging-dev} |
@@ -184,8 +188,9 @@ Last-Update: Tue, 03 Mar 2020 01:42:04 +0000
dindel | 1 | {bio} |
dwgsim | 1 | {bio} |
edflib | 1 | {imaging-dev} |
- embassy-phylip | 1 | {bio,cloud} |
+ embassy-phylip | 1 | {cloud,bio} |
emmax | 1 | {bio} |
+ fasta3 | 1 | {bio} |
fastml | 1 | {bio} |
freebayes | 1 | {bio} |
fsm-lite | 1 | {bio} |
@@ -198,10 +203,9 @@ Last-Update: Tue, 03 Mar 2020 01:42:04 +0000
lamarc | 1 | {bio} |
libctapimkt | 1 | {practice} |
libhmsbeagle | 1 | {bio-dev} |
- libncl | 1 | {bio} |
libpal-java | 1 | {bio-dev} |
- libsmithwaterman | 1 | {bio} |
libsmithwaterman | 1 | {bio-dev} |
+ libsmithwaterman | 1 | {bio} |
libvistaio | 1 | {imaging-dev} |
logol | 1 | {bio} |
maffilter | 1 | {bio} |
@@ -215,8 +219,8 @@ Last-Update: Tue, 03 Mar 2020 01:42:04 +0000
phipack | 1 | {bio} |
phybin | 1 | {bio} |
pilercr | 1 | {bio} |
+ poretools | 1 | {bio} |
prottest | 1 | {bio-phylogeny,bio} |
- qcumber | 1 | {bio} |
relion | 1 | {bio} |
repeatmasker-recon | 1 | {bio} |
roguenarok | 1 | {bio} |
@@ -241,16 +245,16 @@ Last-Update: Tue, 03 Mar 2020 01:42:04 +0000
surankco | 1 | {bio} |
thesias | 1 | {bio} |
tnseq-transit | 1 | {bio} |
- tree-puzzle | 1 | {bio,cloud,bio-phylogeny} |
+ tree-puzzle | 1 | {cloud,bio-phylogeny,bio} |
varscan | 1 | {bio} |
volpack | 1 | {imaging-dev} |
bambamc | 0 | {bio-dev} |
biobambam2 | 0 | {bio,bio-dev} |
biojava4-live | 0 | {bio-dev} |
+ biosig4c++ | 0 | {physics} |
biosyntax | 0 | {bio} |
camp | 0 | {imaging-dev} |
emboss-explorer | 0 | {bio} |
- fasta3 | 0 | {bio} |
fis-gtm | 0 | {his} |
freecontact | 0 | {bio-dev} |
gatb-core | 0 | {bio-dev} |
@@ -295,11 +299,11 @@ Last-Update: Tue, 03 Mar 2020 01:42:04 +0000
opencfu | 0 | {laboratory} |
opensurgsim | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
- oscar | 0 | {data,practice,tools} |
+ oscar | 0 | {tools,data,practice} |
papyrus | 0 | {imaging-dev} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
- python-deeptools | 0 | {bio,bio-dev} |
+ python-deeptools | 0 | {bio-dev,bio} |
python-py2bit | 0 | {bio,bio-dev} |
python-pyani | 0 | {bio-dev} |
python-tinyalign | 0 | {bio-dev,bio} |
@@ -316,5 +320,5 @@ Last-Update: Tue, 03 Mar 2020 01:42:04 +0000
trim-galore | 0 | {bio} |
varna | 0 | {bio} |
vtk-dicom | 0 | {imaging-dev} |
-(344 rows)
+(348 rows)
=====================================
outdated_med-packages.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Tue, 03 Mar 2020 01:42:04 +0000
+Last-Update: Tue, 03 Mar 2020 13:42:04 +0000
source | version | upstream_version | uploaders | Last uploader | Last uploaded
-------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------
@@ -6,7 +6,7 @@ Last-Update: Tue, 03 Mar 2020 01:42:04 +0000
artemis | 17.0.1 | 18.1.0 | Andreas Tille | Andreas Tille | 2019-02-08 11:19:24+00
atropos | 1.1.24 | 2.0.0-alpha.4 | Andreas Tille | Steffen Moeller | 2019-11-30 12:19:31+00
baitfisher | 1.2.7+git20180107.e92dbf2 | 1.2.7+git20190123.241d060 | Olivier Sallou | Andreas Tille | 2018-09-24 13:04:18+00
- beast2-mcmc | 2.6.0 | 2.6.1 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-07-31 13:08:02+00
+ beast2-mcmc | 2.6.0 | 2.6.2 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-07-31 13:08:02+00
biobambam2 | 2.0.153 | 2.0.156+ds | Andreas Tille | Andreas Tille | 2020-02-05 13:20:41+00
biojava-live | 1.7.1 | 1.9.3 | Andreas Tille,Olivier Sallou,Steffen Moeller | Andreas Tille | 2018-11-12 15:49:23+00
biomaj3 | 3.1.14 | 3.1.16 | Olivier Sallou | Olivier Sallou | 2020-02-08 18:22:42+00
@@ -40,7 +40,7 @@ Last-Update: Tue, 03 Mar 2020 01:42:04 +0000
libedlib | 1.2.4 | 1.2.6 | Andreas Tille | Andreas Tille | 2019-08-19 00:34:56+00
libgclib | 0.11.4 | 0.11.7 | Andreas Tille,Michael R. Crusoe,Steffen Moeller | Michael R. Crusoe | 2020-02-14 13:04:26+00
libics | 1.6.3 | 1.6.4 | Andreas Tille | Andreas Tille | 2019-08-01 12:39:13+00
- libjloda-java | 0.0+git20180523.cbaf6d1 | 0.0+git20200227.17134f9 | Andreas Tille | Andreas Tille | 2018-05-25 21:49:43+00
+ libjloda-java | 0.0+git20180523.cbaf6d1 | 0.0+git20200302.2594964 | Andreas Tille | Andreas Tille | 2018-05-25 21:49:43+00
libmaus2 | 2.0.698 | 2.0.704 | Andreas Tille,Steffen Moeller | Andreas Tille | 2020-02-05 10:04:12+00
libsis-base-java | 18.09~pre1+git20180827.fe4953e | 18.09~pre1+git20180928.45fbd31 | Andreas Tille,Olivier Sallou,Tim Booth | Andreas Tille | 2018-09-26 08:35:30+00
libundead | 1.0.10 | 1.1.1 | Andreas Tille | Andreas Tille | 2019-09-13 21:06:10+00
@@ -58,6 +58,7 @@ Last-Update: Tue, 03 Mar 2020 01:42:04 +0000
picard-tools | 2.18.25 | 2.22.0 | Andreas Tille,Charles Plessy,Olivier Sallou,Steffen Moeller,Vincent Danjean | Andreas Tille | 2019-02-04 09:20:37+00
plink2 | 2.00~a3-200217 | 200225 | Dylan Aïssi | Dylan Aïssi | 2020-02-19 06:19:18+00
prokka | 1.14.5 | 1.14.6 | Andreas Tille,Michael R. Crusoe | Michael R. Crusoe | 2019-12-04 11:00:31+00
+ psychopy | 2020.1.1 | 2020.1.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-02-24 08:55:42+00
pydicom | 1.4.1 | 1.4.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-01-23 12:34:53+00
python-avro | 1.9.1 | 1.9.2 | Afif Elghraoui | Andreas Tille | 2019-12-18 08:41:55+00
python-bids-validator | 1.2.4 | 1.4.2 | Yaroslav Halchenko | Yaroslav Halchenko | 2019-08-17 19:00:11+00
@@ -91,7 +92,7 @@ Last-Update: Tue, 03 Mar 2020 01:42:04 +0000
unanimity | 3.3.0 | 4.2.0 | Afif Elghraoui,Andreas Tille | Adrian Bunk | 2019-02-06 07:34:42+00
vsearch | 2.14.1 | 2.14.2 | Andreas Tille,Tim Booth | Andreas Tille | 2019-12-17 10:07:09+00
xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00
-(89 rows)
+(90 rows)
source | id | severity | title
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/4dd4ebed23e5ad5b872139d1a311b91d87535ea6
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/4dd4ebed23e5ad5b872139d1a311b91d87535ea6
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