Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
f29656bf by Andreas Tille at 2020-03-27T13:44:23+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,184 +1,184 @@
-Last-Update: Fri, 27 Mar 2020 01:42:03 +0000
+Last-Update: Fri, 27 Mar 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 162 | {imaging,covid-19} |
- orthanc | 99 | {imaging,practice,covid-19} |
- gdcm | 49 | {imaging-dev} |
- orthanc-wsi | 43 | {practice,imaging,covid-19,laboratory,oncology,his} |
+ dcmtk | 165 | {imaging,covid-19} |
+ orthanc | 99 | {practice,covid-19,imaging} |
+ gdcm | 48 | {imaging-dev} |
+ orthanc-wsi | 43 | {practice,imaging,covid-19,his,oncology,laboratory} |
+ htsjdk | 36 | {bio-dev} |
amide | 35 | {imaging} |
- htsjdk | 35 | {bio-dev} |
dcm2niix | 31 | {imaging} |
dicomscope | 28 | {imaging} |
- dicom3tools | 25 | {imaging} |
+ dicom3tools | 26 | {imaging} |
gnumed-server | 18 | {covid-19,practice} |
pixelmed | 18 | {imaging} |
- invesalius | 17 | {imaging} |
+ gdcm | 17 | {covid-19,imaging} |
minc-tools | 17 | {imaging} |
- ngs-sdk | 17 | {bio-dev} |
- openslide | 16 | {imaging} |
- gdcm | 15 | {covid-19,imaging} |
+ invesalius | 16 | {imaging} |
+ ngs-sdk | 16 | {bio-dev} |
+ openslide | 15 | {imaging} |
biojava-live | 14 | {bio-dev} |
- king | 14 | {typesetting,imaging} |
+ ncbi-entrez-direct | 14 | {bio} |
vtk-dicom | 14 | {imaging} |
adun.app | 13 | {bio} |
- insighttoolkit4 | 13 | {imaging-dev} |
- ncbi-entrez-direct | 13 | {bio} |
+ king | 13 | {imaging,typesetting} |
cgview | 12 | {bio} |
- psychopy | 12 | {psychology,covid-19} |
- diamond-aligner | 11 | {covid-19,bio} |
+ insighttoolkit4 | 12 | {imaging-dev} |
ea-utils | 11 | {bio} |
mia | 11 | {imaging} |
- staden | 11 | {bio} |
- tree-puzzle | 11 | {cloud,bio-phylogeny,bio} |
- biosig4c++ | 10 | {imaging,covid-19,physics} |
+ psychopy | 11 | {psychology,covid-19} |
+ radiant | 11 | {bio} |
+ dazzdb | 10 | {bio} |
+ diamond-aligner | 10 | {bio,covid-19} |
jebl2 | 10 | {bio-dev} |
king-probe | 10 | {bio} |
librg-utils-perl | 10 | {bio} |
norsp | 10 | {bio} |
- plastimatch | 10 | {imaging} |
- radiant | 10 | {bio} |
+ obitools | 10 | {bio} |
+ staden | 10 | {bio} |
+ tree-puzzle | 10 | {cloud,bio-phylogeny,bio} |
+ biosig4c++ | 9 | {covid-19,imaging,physics} |
bppsuite | 9 | {bio} |
- dazzdb | 9 | {bio} |
- fastlink | 9 | {bio,cloud} |
+ fastlink | 9 | {cloud,bio} |
gdcm | 9 | {imaging-dev} |
mipe | 9 | {cloud,bio} |
ncbi-seg | 9 | {bio} |
- obitools | 9 | {bio} |
- paml | 9 | {bio} |
- ampliconnoise | 8 | {cloud,bio} |
+ ngs-sdk | 9 | {bio-dev} |
+ phast | 9 | {bio} |
+ plastimatch | 9 | {imaging} |
+ prime-phylo | 9 | {cloud,bio} |
+ abacas | 8 | {bio} |
+ ampliconnoise | 8 | {bio,cloud} |
+ anfo | 8 | {cloud,bio} |
arden | 8 | {bio,cloud} |
biomaj3-cli | 8 | {cloud} |
+ daligner | 8 | {bio-ngs,bio} |
ecopcr | 8 | {bio} |
- freebayes | 8 | {bio} |
+ embassy-domainatrix | 8 | {cloud,bio} |
freecontact | 8 | {cloud,bio} |
hunspell-en-med | 8 | {tools} |
maqview | 8 | {bio} |
- mauve-aligner | 8 | {bio} |
melting | 8 | {cloud,bio} |
- neobio | 8 | {cloud,bio} |
- ngs-sdk | 8 | {bio-dev} |
- phast | 8 | {bio} |
- phyutility | 8 | {cloud,bio} |
+ neobio | 8 | {bio,cloud} |
+ paml | 8 | {bio} |
+ phyutility | 8 | {bio,cloud} |
piler | 8 | {bio} |
- prime-phylo | 8 | {bio,cloud} |
pscan-tfbs | 8 | {bio} |
- sigma-align | 8 | {bio,bio-phylogeny,cloud} |
- abacas | 7 | {bio} |
- alter-sequence-alignment | 7 | {bio} |
- anfo | 7 | {bio,cloud} |
+ seqsero | 8 | {bio} |
+ sigma-align | 8 | {bio-phylogeny,cloud,bio} |
bio-tradis | 7 | {bio-dev,bio} |
bitseq | 7 | {bio} |
codonw | 7 | {bio} |
- daligner | 7 | {bio,bio-ngs} |
edtsurf | 7 | {bio} |
- embassy-domainatrix | 7 | {cloud,bio} |
+ embassy-domalign | 7 | {bio,cloud} |
+ embassy-domsearch | 7 | {cloud,bio} |
estscan | 7 | {bio} |
- fitgcp | 7 | {bio,cloud} |
+ fitgcp | 7 | {cloud,bio} |
+ freebayes | 7 | {bio} |
+ gasic | 7 | {cloud,bio} |
jaligner | 7 | {bio} |
lagan | 7 | {bio} |
lamarc | 7 | {bio} |
lucy | 7 | {bio} |
+ mauve-aligner | 7 | {bio} |
microbegps | 7 | {bio} |
- paraclu | 7 | {bio,cloud} |
- perm | 7 | {cloud,bio} |
+ paraclu | 7 | {cloud,bio} |
+ perm | 7 | {bio,cloud} |
placnet | 7 | {bio} |
poretools | 7 | {bio} |
predictprotein | 7 | {bio} |
- probabel | 7 | {cloud,bio} |
+ probabel | 7 | {bio,cloud} |
saint | 7 | {bio} |
- seqsero | 7 | {bio} |
seqtools | 7 | {bio} |
sibsim4 | 7 | {cloud,bio} |
+ tracetuner | 7 | {bio} |
+ alter-sequence-alignment | 6 | {bio} |
andi | 6 | {bio} |
baitfisher | 6 | {bio} |
+ beads | 6 | {bio} |
beast2-mcmc | 6 | {bio} |
biomaj3-daemon | 6 | {bio} |
bio-rainbow | 6 | {bio} |
+ brig | 6 | {bio} |
canu | 6 | {bio} |
centrifuge | 6 | {bio} |
- clonalframeml | 6 | {covid-19,bio} |
+ clonalframeml | 6 | {bio,covid-19} |
+ clonalorigin | 6 | {bio} |
dascrubber | 6 | {bio} |
elph | 6 | {bio} |
- embassy-domalign | 6 | {cloud,bio} |
- embassy-domsearch | 6 | {bio,cloud} |
- gasic | 6 | {bio,cloud} |
gatb-core | 6 | {bio} |
harvest-tools | 6 | {bio} |
indelible | 6 | {bio} |
ipig | 6 | {bio} |
jellyfish1 | 6 | {bio} |
- libminc | 6 | {imaging-dev} |
- libpal-java | 6 | {bio-dev} |
- mapsembler2 | 6 | {cloud,bio} |
+ logol | 6 | {bio} |
+ mapsembler2 | 6 | {bio,cloud} |
mlv-smile | 6 | {cloud,bio} |
murasaki | 6 | {bio} |
orthanc-webviewer | 6 | {imaging} |
proalign | 6 | {bio-phylogeny,bio} |
pscan-chip | 6 | {bio} |
quorum | 6 | {bio} |
+ rambo-k | 6 | {bio} |
rdp-readseq | 6 | {bio} |
+ repeatmasker-recon | 6 | {bio} |
scythe | 6 | {bio} |
+ seer | 6 | {bio} |
seqtools | 6 | {bio} |
sickle | 6 | {bio} |
+ sprai | 6 | {bio} |
spread-phy | 6 | {bio,bio-phylogeny} |
- squizz | 6 | {cloud,bio} |
- tracetuner | 6 | {bio} |
+ squizz | 6 | {bio,cloud} |
transtermhp | 6 | {bio} |
- treeview | 6 | {bio,bio-phylogeny} |
+ treeview | 6 | {bio-phylogeny,bio} |
vsearch | 6 | {bio} |
- zalign | 6 | {cloud,bio} |
+ zalign | 6 | {bio,cloud} |
assemblytics | 5 | {bio} |
bandage | 5 | {bio} |
- beads | 5 | {bio} |
beast-mcmc | 5 | {bio-phylogeny,bio} |
- brig | 5 | {bio} |
- clonalorigin | 5 | {bio} |
cluster3 | 5 | {bio} |
- dicompyler | 5 | {oncology} |
dwgsim | 5 | {bio} |
elastix | 5 | {imaging} |
+ fastml | 5 | {bio} |
ghmm | 5 | {bio} |
hinge | 5 | {bio} |
- jmodeltest | 5 | {bio-phylogeny,bio} |
- libdivsufsort | 5 | {bio-dev} |
+ jmodeltest | 5 | {bio,bio-phylogeny} |
+ libminc | 5 | {imaging-dev} |
libncl | 5 | {bio} |
+ libpal-java | 5 | {bio-dev} |
librdp-taxonomy-tree-java | 5 | {bio-dev} |
- libsbml | 5 | {bio-dev} |
- logol | 5 | {bio} |
maffilter | 5 | {bio} |
mhap | 5 | {bio,bio-ngs} |
mptp | 5 | {bio} |
openslide | 5 | {imaging-dev} |
+ parsnp | 5 | {bio} |
patman | 5 | {bio} |
phipack | 5 | {bio} |
- prottest | 5 | {bio,bio-phylogeny} |
pymia | 5 | {imaging-dev} |
- rambo-k | 5 | {bio} |
rdp-classifier | 5 | {bio} |
- repeatmasker-recon | 5 | {bio} |
- seer | 5 | {bio} |
- sprai | 5 | {bio} |
sumatra | 5 | {bio} |
tvc | 5 | {bio} |
- blasr | 4 | {bio-ngs,bio} |
- delly | 4 | {covid-19,bio} |
+ blasr | 4 | {bio,bio-ngs} |
+ delly | 4 | {bio,covid-19} |
+ dicompyler | 4 | {oncology} |
dindel | 4 | {bio} |
- fastml | 4 | {bio} |
fsm-lite | 4 | {bio} |
+ libdivsufsort | 4 | {bio-dev} |
+ libsbml | 4 | {bio-dev} |
metaphlan2 | 4 | {bio} |
- parsnp | 4 | {bio} |
pbdagcon | 4 | {bio} |
phybin | 4 | {bio} |
pilon | 4 | {bio} |
plasmidseeker | 4 | {bio} |
+ prottest | 4 | {bio-phylogeny,bio} |
rampler | 4 | {bio} |
rdp-alignment | 4 | {bio} |
relion | 4 | {bio} |
roguenarok | 4 | {bio} |
runcircos-gui | 4 | {bio} |
salmon | 4 | {bio} |
- samblaster | 4 | {covid-19,bio} |
+ samblaster | 4 | {bio,covid-19} |
sga | 4 | {bio} |
soapaligner | 4 | {bio} |
soapsnp | 4 | {bio} |
@@ -193,7 +193,7 @@ Last-Update: Fri, 27 Mar 2020 01:42:03 +0000
orthanc-dicomweb | 3 | {covid-19,imaging} |
orthanc-mysql | 3 | {imaging} |
relion | 3 | {bio} |
- rtax | 3 | {bio,cloud} |
+ rtax | 3 | {cloud,bio} |
segemehl | 3 | {bio} |
seqmagick | 3 | {bio,covid-19} |
snap-aligner | 3 | {bio} |
@@ -203,15 +203,12 @@ Last-Update: Fri, 27 Mar 2020 01:42:03 +0000
surankco | 3 | {bio} |
tnseq-transit | 3 | {bio,covid-19} |
varscan | 3 | {bio} |
- ctn | 2 | {imaging-dev} |
cufflinks | 2 | {cloud,bio} |
getdata | 2 | {bio} |
- kma | 2 | {bio,covid-19} |
+ kma | 2 | {covid-19,bio} |
kmerresistance | 2 | {bio} |
libsmithwaterman | 2 | {bio} |
nanook | 2 | {bio} |
- opencfu | 2 | {laboratory} |
- papyrus | 2 | {imaging-dev} |
qcumber | 2 | {bio} |
qrisk2 | 2 | {practice} |
samtools-legacy | 2 | {bio-dev} |
@@ -219,14 +216,16 @@ Last-Update: Fri, 27 Mar 2020 01:42:03 +0000
skesa | 2 | {bio} |
spaced | 2 | {bio} |
srf | 2 | {bio-dev} |
- tree-puzzle | 2 | {bio-phylogeny,bio,cloud} |
+ thesias | 2 | {bio,covid-19} |
+ tree-puzzle | 2 | {bio,cloud,bio-phylogeny} |
volpack | 2 | {imaging-dev} |
- acedb | 1 | {cloud,bio} |
atropos | 1 | {bio} |
+ biosig4c++ | 1 | {physics,imaging-dev} |
biosig4c++ | 1 | {imaging-dev,physics} |
blimps | 1 | {bio} |
+ ctn | 1 | {imaging-dev} |
edflib | 1 | {imaging-dev} |
- embassy-phylip | 1 | {cloud,bio} |
+ embassy-phylip | 1 | {bio,cloud} |
libbio-mage-utils-perl | 1 | {bio-dev} |
libchado-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
@@ -237,20 +236,21 @@ Last-Update: Fri, 27 Mar 2020 01:42:03 +0000
mencal | 1 | {tools} |
ngs-sdk | 1 | {bio-dev} |
nutsqlite | 1 | {tools} |
+ opencfu | 1 | {laboratory} |
opensurgsim | 1 | {imaging-dev} |
orthanc-postgresql | 1 | {imaging} |
pal2nal | 1 | {bio} |
+ papyrus | 1 | {imaging-dev} |
pilercr | 1 | {bio} |
ragout | 1 | {bio,covid-19} |
sift | 1 | {bio} |
stringtie | 1 | {covid-19,bio} |
- thesias | 1 | {bio,covid-19} |
trace2dbest | 1 | {bio} |
- vtk-dicom | 1 | {imaging-dev} |
- augur | 0 | {bio,covid-19} |
+ acedb | 0 | {bio,cloud} |
+ augur | 0 | {covid-19,bio} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {covid-19} |
- biobambam2 | 0 | {covid-19,bio-dev,bio} |
+ biobambam2 | 0 | {bio-dev,bio,covid-19} |
biojava4-live | 0 | {bio-dev} |
biosig4c++ | 0 | {physics} |
biosyntax | 0 | {bio} |
@@ -261,7 +261,7 @@ Last-Update: Fri, 27 Mar 2020 01:42:03 +0000
fis-gtm | 0 | {his} |
freecontact | 0 | {bio-dev} |
gatb-core | 0 | {bio-dev} |
- htscodecs | 0 | {covid-19,bio-dev} |
+ htscodecs | 0 | {bio-dev,covid-19} |
libbiod | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
libbpp-core | 0 | {bio-dev} |
@@ -274,9 +274,9 @@ Last-Update: Fri, 27 Mar 2020 01:42:03 +0000
libdisorder | 0 | {bio-dev} |
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
- libics | 0 | {covid-19,imaging-dev} |
+ libics | 0 | {imaging-dev,covid-19} |
libjloda-java | 0 | {bio-dev} |
- libmaus2 | 0 | {covid-19,bio-dev} |
+ libmaus2 | 0 | {bio-dev,covid-19} |
libmems | 0 | {bio-dev} |
libmialm | 0 | {imaging-dev} |
libmuscle | 0 | {bio-dev} |
@@ -296,25 +296,26 @@ Last-Update: Fri, 27 Mar 2020 01:42:03 +0000
murasaki | 0 | {bio} |
ncbi-vdb | 0 | {bio-dev} |
orthanc-imagej | 0 | {imaging} |
- oscar | 0 | {practice,tools,data} |
+ oscar | 0 | {data,practice,tools} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
- python-py2bit | 0 | {bio-dev,bio} |
+ python-py2bit | 0 | {bio,bio-dev} |
python-questplus | 0 | {covid-19} |
python-scitrack | 0 | {covid-19} |
- relion | 0 | {bio} |
relion | 0 | {bio-dev} |
+ relion | 0 | {bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seqan | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
simpleitk | 0 | {imaging-dev} |
skewer | 0 | {bio} |
- smrtanalysis | 0 | {bio,covid-19} |
+ smrtanalysis | 0 | {covid-19,bio} |
solvate | 0 | {bio} |
- spaln | 0 | {bio,covid-19} |
+ spaln | 0 | {covid-19,bio} |
trim-galore | 0 | {bio} |
varna | 0 | {bio} |
+ vtk-dicom | 0 | {imaging-dev} |
python-etelemetry | -1 | {covid-19} |
-(344 rows)
+(345 rows)
=====================================
outdated_med-packages.txt
=====================================
@@ -1,65 +1,65 @@
-Last-Update: Fri, 27 Mar 2020 01:42:03 +0000
+Last-Update: Fri, 27 Mar 2020 13:42:03 +0000
- source | version | upstream_version | uploaders | Last uploader | Last uploaded
--------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------
- artemis | 17.0.1 | 18.1.0 | Andreas Tille | Andreas Tille | 2019-02-08 11:19:24+00
- atropos | 1.1.24 | 2.0.0-alpha.4 | Andreas Tille | Steffen Moeller | 2019-11-30 12:19:31+00
- baitfisher | 1.2.7+git20180107.e92dbf2 | 1.2.7+git20190123.241d060 | Olivier Sallou | Andreas Tille | 2018-09-24 13:04:18+00
- beagle | 5.1-191125 | 200321 | Dylan Aïssi | Dylan Aïssi | 2019-12-14 18:34:10+00
- biobambam2 | 2.0.153 | 2.0.159+ds | Andreas Tille | Andreas Tille | 2020-02-05 13:20:41+00
- biomaj3 | 3.1.14 | 3.1.16 | Olivier Sallou | Olivier Sallou | 2020-02-08 18:22:42+00
- biosig4c++ | 1.9.5 | 2.0.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-02 08:38:37+00
- ctdopts | 1.2 | 1.3 | Michael R. Crusoe | Michael R. Crusoe | 2018-02-28 12:34:26+00
- cwltool | 2.0.20200224214940 | 3.0.20200324120055 | Michael R. Crusoe | Michael R. Crusoe | 2020-02-26 12:07:54+00
- daligner | 1.0+git20200115.c2b47da | 1.0+git20200322.477d5b9 | Andreas Tille | Andreas Tille | 2020-01-28 10:34:12+00
- dazzdb | 1.0+git20200115.d8adde7 | 1.0+git20200322.ba88d76 | Andreas Tille | Andreas Tille | 2020-01-23 16:34:35+00
- dcm2niix | 1.0.20181125 | 1.0.20190902 | Ghislain Antony Vaillant | Andreas Tille | 2019-01-30 10:04:52+00
- diamond-aligner | 0.9.30 | 0.9.31 | Andreas Tille | Michael R. Crusoe | 2020-02-17 13:34:16+00
- ea-utils | 1.1.2 | 1.04.807 | Andreas Tille,Tim Booth | Andreas Tille | 2018-04-26 21:48:01+00
- elastix | 4.9.0 | 5.0.0 | Gert Wollny,Steve M. Robbins | Andreas Tille | 2019-01-15 11:50:11+00
- falcon | 1.8.8 | 2.1.4 | Afif Elghraoui | Afif Elghraoui | 2017-12-16 08:49:13+00
- fis-gtm | 6.3-007 | 6.3-010 | Amul Shah,Andreas Tille | Amul Shah | 2019-02-28 14:12:19+00
- gatb-core | 1.4.1+git20191209.9398f28 | 1.4.1+git20200118.1dc23ff | Andreas Tille,Nadiya Sitdykova | Michael R. Crusoe | 2020-02-17 14:52:30+00
- gmap | 2019-09-12 | 2020-03-12 | Alexandre Mestiashvili,Andreas Tille,Shaun Jackman | Steffen Moeller | 2019-12-30 12:37:15+00
- hdmf | 1.5.4 | 1.6.1 | Yaroslav Halchenko | Yaroslav Halchenko | 2020-02-03 03:01:25+00
- hyphy | 2.5.1 | 2.5.7 | Andreas Tille | Andreas Tille | 2020-01-07 21:19:50+00
- imagej | 1.52r | 1.52u | David Miguel Susano Pinto | Andreas Tille | 2019-12-04 14:55:11+00
- ismrmrd | 1.4.0 | 1.4.1 | Ghislain Antony Vaillant | Andreas Tille | 2019-01-26 07:49:20+00
- jebl2 | 0.1+git20180418.653eb83 | 0.1+git20190308.a98448e | Andreas Tille | Andreas Tille | 2018-07-05 12:05:57+00
- kineticstools | 0.6.1+git20180425.27a1878 | 0.6.1+git20190618.0ac41a0 | Andreas Tille | Andreas Tille | 2019-02-14 13:26:09+00
- king-probe | 2.16.160404+git20180613.a09b012 | 2.16.160404+git20200121.9b198c1 | Andreas Tille,Malihe Asemani,Michael Prisant | Andreas Tille | 2018-07-16 07:34:48+00
- kma | 1.2.21 | 1.2.22 | Andreas Tille | Steffen Moeller | 2020-01-17 22:54:10+00
- libbioparser-dev | 2.0.1 | 2.1.2 | Andreas Tille | Andreas Tille | 2019-07-15 13:35:45+00
- libjloda-java | 0.0+git20180523.cbaf6d1 | 0.0+git20200318.6fef1b7 | Andreas Tille | Andreas Tille | 2018-05-25 21:49:43+00
- libsis-base-java | 18.09~pre1+git20180827.fe4953e | 18.09~pre1+git20180928.45fbd31 | Andreas Tille,Olivier Sallou,Tim Booth | Andreas Tille | 2018-09-26 08:35:30+00
- libthread-pool | 2.0.1 | 2.0.2 | Andreas Tille | Andreas Tille | 2019-11-19 21:21:23+00
- metaphlan2 | 2.9.22 | 2.96.1 | Andreas Tille | Andreas Tille | 2019-11-08 07:19:11+00
- ncbi-blast+ | 2.9.0 | 2.10.0 | Aaron M. Ucko,Andreas Tille,Olivier Sallou | Aaron M. Ucko | 2020-02-17 01:50:53+00
- ncbi-entrez-direct | 12.0.20190816 | 13.5.20200306 | Aaron M. Ucko | Aaron M. Ucko | 2020-02-03 03:53:53+00
- nibabel | 3.0.1 | 3.0.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-03 14:58:34+00
- pbseqlib | 5.3.3 | 5.3.4 | Andreas Tille | Andreas Tille | 2020-01-29 15:04:33+00
- picard-tools | 2.18.25 | 2.22.1 | Andreas Tille,Charles Plessy,Olivier Sallou,Steffen Moeller,Vincent Danjean | Andreas Tille | 2019-02-04 09:20:37+00
- plink2 | 2.00~a3-200217 | 200321 | Dylan Aïssi | Dylan Aïssi | 2020-02-19 06:19:18+00
- pynn | 0.7.5 | 0.9.5 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-20 11:00:12+00
- python-avro | 1.9.1 | 1.9.2 | Afif Elghraoui | Andreas Tille | 2019-12-18 08:41:55+00
- python-bids-validator | 1.2.4 | 1.4.4 | Yaroslav Halchenko | Yaroslav Halchenko | 2019-08-17 19:00:11+00
- python-cobra | 0.14.2 | 0.17.1 | Afif Elghraoui | Liubov Chuprikova | 2019-03-02 06:49:44+00
- python-colormap | 1.0.2 | 1.0.3 | Andreas Tille | Andreas Tille | 2019-12-06 16:51:43+00
- python-cutadapt | 2.8 | 2.9 | Andreas Tille,Kevin Murray,Olivier Sallou,Steffen Moeller | Steffen Moeller | 2020-02-03 10:50:38+00
- python-pymummer | 0.10.3 | 0.11.0 | Afif Elghraoui | Andreas Tille | 2019-01-07 09:06:07+00
- python-schema-salad | 5.0.20200220195218 | 5.0.20200302192450 | Michael R. Crusoe | Michael R. Crusoe | 2020-02-27 19:19:53+00
- q2-cutadapt | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:34:32+00
- q2-demux | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:34:40+00
- racon | 1.4.10 | 1.4.12 | Andreas Tille,Cédric Lood | Michael R. Crusoe | 2019-11-12 17:22:24+00
- relion | 1.4 | 3.0.8 | Andreas Tille,Goswin von Brederlow,Navid Fehrenbacher,Roland Fehrenbacher | Andreas Tille | 2018-06-14 12:49:40+00
- resfinder-db | 0.0+git20191001.149209d | 0.0+git20200318.d6f36d3 | Andreas Tille | Andreas Tille | 2019-11-16 23:00:12+00
- salmon | 0.12.0 | 1.1.0 | Kevin Murray,Michael R. Crusoe | Andreas Tille | 2018-12-13 19:05:56+00
- scrm | 1.7.3 | 1.7.4 | Kevin Murray | Andreas Tille | 2018-12-17 13:05:34+00
- seaview | 4.7 | 5.0.2 | Andreas Tille,Charles Plessy | Andreas Tille | 2018-05-09 13:43:40+00
- spoa | 3.0.1 | 3.0.2 | Andreas Tille | Andreas Tille | 2019-09-16 11:53:05+00
- sumatra | 1.0.31 | 1.0.34 | Andreas Tille,Tim Booth | Andreas Tille | 2018-10-16 10:06:33+00
- t-coffee | 12.00.7fb08c2 | 13.41.0.28bdc39 | Andreas Tille,Steffen Moeller | Andreas Tille | 2019-02-15 07:57:10+00
- xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00
+ source | version | upstream_version | uploaders | Last uploader | Last uploaded
+-------------------------------+---------------------------------+---------------------------------+---------------------------------------------------------------------------+----------------------+------------------------
+ atropos | 1.1.24 | 2.0.0-alpha.4 | Andreas Tille | Steffen Moeller | 2019-11-30 12:19:31+00
+ baitfisher | 1.2.7+git20180107.e92dbf2 | 1.2.7+git20190123.241d060 | Olivier Sallou | Andreas Tille | 2018-09-24 13:04:18+00
+ beagle | 5.1-191125 | 200324 | Dylan Aïssi | Dylan Aïssi | 2019-12-14 18:34:10+00
+ beast2-mcmc | 2.6.0 | 2.6.2 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-07-31 13:08:02+00
+ biobambam2 | 2.0.153 | 2.0.159+ds | Andreas Tille | Andreas Tille | 2020-02-05 13:20:41+00
+ biomaj3-core | 3.0.19 | 3.0.22 | Olivier Sallou | Olivier Sallou | 2019-11-12 11:20:23+00
+ biomaj3-process | 3.0.15 | 3.0.16 | Olivier Sallou | Olivier Sallou | 2019-11-12 11:20:38+00
+ biosig4c++ | 1.9.5 | 2.0.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-02 08:38:37+00
+ charls | 2.0.0 | 2.1.0 | Andreas Tille | Andreas Tille | 2019-01-10 20:10:56+00
+ ctdopts | 1.2 | 1.3 | Michael R. Crusoe | Michael R. Crusoe | 2018-02-28 12:34:26+00
+ cwltool | 2.0.20200224214940 | 3.0.20200324120055 | Michael R. Crusoe | Michael R. Crusoe | 2020-02-26 12:07:54+00
+ daligner | 1.0+git20200115.c2b47da | 1.0+git20200322.477d5b9 | Andreas Tille | Andreas Tille | 2020-01-28 10:34:12+00
+ dazzdb | 1.0+git20200115.d8adde7 | 1.0+git20200322.ba88d76 | Andreas Tille | Andreas Tille | 2020-01-23 16:34:35+00
+ dcm2niix | 1.0.20181125 | 1.0.20190902 | Ghislain Antony Vaillant | Andreas Tille | 2019-01-30 10:04:52+00
+ diamond-aligner | 0.9.30 | 0.9.31 | Andreas Tille | Michael R. Crusoe | 2020-02-17 13:34:16+00
+ fis-gtm | 6.3-007 | 6.3-010 | Amul Shah,Andreas Tille | Amul Shah | 2019-02-28 14:12:19+00
+ gatb-core | 1.4.1+git20191209.9398f28 | 1.4.1+git20200118.1dc23ff | Andreas Tille,Nadiya Sitdykova | Michael R. Crusoe | 2020-02-17 14:52:30+00
+ gmap | 2019-09-12 | 2020-03-12 | Alexandre Mestiashvili,Andreas Tille,Shaun Jackman | Steffen Moeller | 2019-12-30 12:37:15+00
+ hdmf | 1.5.4 | 1.6.1 | Yaroslav Halchenko | Yaroslav Halchenko | 2020-02-03 03:01:25+00
+ htsjdk | 2.18.2 | 2.21.3 | Andreas Tille,Charles Plessy,Olivier Sallou,Vincent Danjean | Andreas Tille | 2019-03-01 22:19:40+00
+ hyphy | 2.5.1 | 2.5.7 | Andreas Tille | Andreas Tille | 2020-01-07 21:19:50+00
+ igraph | 0.8.0 | 0.8.1 | Andreas Tille | Andreas Tille | 2020-03-14 20:10:56+00
+ imagej | 1.52r | 1.52u | David Miguel Susano Pinto | Andreas Tille | 2019-12-04 14:55:11+00
+ jebl2 | 0.1+git20180418.653eb83 | 0.1+git20190308.a98448e | Andreas Tille | Andreas Tille | 2018-07-05 12:05:57+00
+ kineticstools | 0.6.1+git20180425.27a1878 | 0.6.1+git20200325.3558942 | Andreas Tille | Andreas Tille | 2019-02-14 13:26:09+00
+ king-probe | 2.16.160404+git20180613.a09b012 | 2.16.160404+git20200121.9b198c1 | Andreas Tille,Malihe Asemani,Michael Prisant | Andreas Tille | 2018-07-16 07:34:48+00
+ kma | 1.2.21 | 1.2.22 | Andreas Tille | Steffen Moeller | 2020-01-17 22:54:10+00
+ libbioparser-dev | 2.0.1 | 2.1.2 | Andreas Tille | Andreas Tille | 2019-07-15 13:35:45+00
+ libjloda-java | 0.0+git20180523.cbaf6d1 | 0.0+git20200318.6fef1b7 | Andreas Tille | Andreas Tille | 2018-05-25 21:49:43+00
+ libsis-base-java | 18.09~pre1+git20180827.fe4953e | 18.09~pre1+git20180928.45fbd31 | Andreas Tille,Olivier Sallou,Tim Booth | Andreas Tille | 2018-09-26 08:35:30+00
+ libthread-pool | 2.0.1 | 2.0.2 | Andreas Tille | Andreas Tille | 2019-11-19 21:21:23+00
+ metaphlan2 | 2.9.22 | 2.96.1 | Andreas Tille | Andreas Tille | 2019-11-08 07:19:11+00
+ ncbi-blast+ | 2.9.0 | 2.10.0 | Aaron M. Ucko,Andreas Tille,Olivier Sallou | Aaron M. Ucko | 2020-02-17 01:50:53+00
+ ncbi-entrez-direct | 12.0.20190816 | 13.5.20200306 | Aaron M. Ucko | Aaron M. Ucko | 2020-02-03 03:53:53+00
+ pbseqlib | 5.3.3 | 5.3.4 | Andreas Tille | Andreas Tille | 2020-01-29 15:04:33+00
+ plink2 | 2.00~a3-200217 | 200321 | Dylan Aïssi | Dylan Aïssi | 2020-02-19 06:19:18+00
+ pydicom | 1.4.1 | 1.4.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-01-23 12:34:53+00
+ pynn | 0.7.5 | 0.9.5 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-20 11:00:12+00
+ python-avro | 1.9.1 | 1.9.2 | Afif Elghraoui | Andreas Tille | 2019-12-18 08:41:55+00
+ python-bids-validator | 1.2.4 | 1.4.4 | Yaroslav Halchenko | Yaroslav Halchenko | 2019-08-17 19:00:11+00
+ python-cobra | 0.14.2 | 0.18.0 | Afif Elghraoui | Liubov Chuprikova | 2019-03-02 06:49:44+00
+ python-colormap | 1.0.2 | 1.0.3 | Andreas Tille | Andreas Tille | 2019-12-06 16:51:43+00
+ python-cutadapt | 2.8 | 2.9 | Andreas Tille,Kevin Murray,Olivier Sallou,Steffen Moeller | Steffen Moeller | 2020-02-03 10:50:38+00
+ python-pymummer | 0.10.3 | 0.11.0 | Afif Elghraoui | Andreas Tille | 2019-01-07 09:06:07+00
+ python-schema-salad | 5.0.20200220195218 | 5.0.20200302192450 | Michael R. Crusoe | Michael R. Crusoe | 2020-02-27 19:19:53+00
+ python-skbio | 0.5.5 | 0.5.6 | Andreas Tille,Kevin Murray,Tim Booth | Michael R. Crusoe | 2020-02-28 14:48:20+00
+ python-treetime | 0.7.1 | 0.7.4 | Andreas Tille | Steffen Moeller | 2020-01-18 20:52:48+00
+ q2-cutadapt | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:34:32+00
+ q2-demux | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:34:40+00
+ relion | 1.4 | 3.0.8 | Andreas Tille,Goswin von Brederlow,Navid Fehrenbacher,Roland Fehrenbacher | Andreas Tille | 2018-06-14 12:49:40+00
+ resfinder-db | 0.0+git20191001.149209d | 0.0+git20200318.d6f36d3 | Andreas Tille | Andreas Tille | 2019-11-16 23:00:12+00
+ salmon | 0.12.0 | 1.1.0 | Kevin Murray,Michael R. Crusoe | Andreas Tille | 2018-12-13 19:05:56+00
+ scrm | 1.7.3 | 1.7.4 | Kevin Murray | Andreas Tille | 2018-12-17 13:05:34+00
+ seaview | 4.7 | 5.0.2 | Andreas Tille,Charles Plessy | Andreas Tille | 2018-05-09 13:43:40+00
+ spoa | 3.0.1 | 3.0.2 | Andreas Tille | Andreas Tille | 2019-09-16 11:53:05+00
+ sumatra | 1.0.31 | 1.0.34 | Andreas Tille,Tim Booth | Andreas Tille | 2018-10-16 10:06:33+00
+ t-coffee | 12.00.7fb08c2 | 13.41.0.28bdc39 | Andreas Tille,Steffen Moeller | Andreas Tille | 2019-02-15 07:57:10+00
+ xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00
(58 rows)
@@ -193,7 +193,6 @@ Last-Update: Fri, 27 Mar 2020 01:42:03 +0000
paleomix | 937232 | normal | paleomix: Python2 removal in sid/bullseye
pbbam | 829741 | important | pbbam: FTBFS (32-bit): pbmerge assertion failure
pbgenomicconsensus | 937255 | serious | pbgenomicconsensus: Python2 removal in sid/bullseye
- pdb2pqr | 937262 | normal | pdb2pqr: Python2 removal in sid/bullseye
phast | 911983 | serious | phast FTBFS on architectures where char is unsigned
phast | 951660 | serious | src:phast: fails to migrate to testing for too long
pixelmed | 706130 | normal | Add support for MammographyCADSR
@@ -270,5 +269,5 @@ Last-Update: Fri, 27 Mar 2020 01:42:03 +0000
xmedcon | 671828 | normal | xmedcon: Cannot open file with YBR photometric interpretation
xmedcon | 779707 | normal | Errors when reading dicomdir file: "No images found" / "Loading: DICM Error reading file"
xmedcon | 924017 | normal | desktop entry
-(205 rows)
+(204 rows)
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/f29656bf3b57e96e9ee9b027e3a6f33b971b085c
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/f29656bf3b57e96e9ee9b027e3a6f33b971b085c
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