[med-svn] [Git][med-team/picard-tools][master] 6 commits: New upstream version 2.27.1+dfsg

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch master at Debian Med / picard-tools


Commits:
f088eabf by Pierre Gruet at 2022-04-23T20:55:19+02:00
New upstream version 2.27.1+dfsg
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3241a630 by Pierre Gruet at 2022-04-23T20:56:27+02:00
Update upstream source from tag 'upstream/2.27.1+dfsg'

Update to upstream version '2.27.1+dfsg'
with Debian dir 6f574defdf7d76fa10c9fd8f2482d7b31377b1d4
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0b37ed0e by Pierre Gruet at 2022-04-23T21:02:35+02:00
Refreshing patches

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b2db714a by Pierre Gruet at 2022-04-23T21:03:40+02:00
Use secure URI in Homepage field.

Changes-By: lintian-brush
Fixes: lintian: homepage-field-uses-insecure-uri
See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html

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bf26678e by Pierre Gruet at 2022-04-23T21:08:27+02:00
Refreshing d/copyright

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64fb2c95 by Pierre Gruet at 2022-04-24T08:08:25+02:00
Upload to unstable

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30 changed files:

- build.gradle
- debian/changelog
- debian/control
- debian/copyright
- debian/patches/10-build.xml.patch
- debian/patches/20-shadowjar.patch
- debian/patches/30-tests-fix-dataprovider.patch
- debian/patches/40-tests-fix-testng.patch
- debian/patches/correct_dataprovider_TestDontMergeAbuttingData.patch
- debian/patches/remove_google_nio.patch
- src/main/java/picard/analysis/AlignmentSummaryMetrics.java
- src/main/java/picard/analysis/BaseDistributionByCycleMetrics.java
- src/main/java/picard/analysis/CollectOxoGMetrics.java
- src/main/java/picard/analysis/CollectQualityYieldMetrics.java
- src/main/java/picard/analysis/CollectRawWgsMetrics.java
- src/main/java/picard/analysis/CollectWgsMetricsWithNonZeroCoverage.java
- src/main/java/picard/analysis/FingerprintingDetailMetrics.java
- src/main/java/picard/analysis/FingerprintingSummaryMetrics.java
- src/main/java/picard/analysis/GcBiasDetailMetrics.java
- src/main/java/picard/analysis/GcBiasSummaryMetrics.java
- src/main/java/picard/analysis/InsertSizeMetrics.java
- src/main/java/picard/analysis/JumpingLibraryMetrics.java
- src/main/java/picard/analysis/RnaSeqMetrics.java
- src/main/java/picard/analysis/RrbsCpgDetailMetrics.java
- src/main/java/picard/analysis/RrbsMetrics.java
- src/main/java/picard/analysis/RrbsSummaryMetrics.java
- src/main/java/picard/analysis/TheoreticalSensitivityMetrics.java
- src/main/java/picard/analysis/WgsMetrics.java
- src/main/java/picard/analysis/artifacts/ErrorSummaryMetrics.java
- src/main/java/picard/analysis/artifacts/SequencingArtifactMetrics.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/compare/7968c7574f7597095f3ab4c7c19ce5e782ad9597...64fb2c95b3feacd0511871c31484986f006739c4

-- 
View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/compare/7968c7574f7597095f3ab4c7c19ce5e782ad9597...64fb2c95b3feacd0511871c31484986f006739c4
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