[med-svn] [Git][med-team/picard-tools][upstream] New upstream version 2.27.1+dfsg

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch upstream at Debian Med / picard-tools


Commits:
f088eabf by Pierre Gruet at 2022-04-23T20:55:19+02:00
New upstream version 2.27.1+dfsg
- - - - -


30 changed files:

- build.gradle
- src/main/java/picard/analysis/AlignmentSummaryMetrics.java
- src/main/java/picard/analysis/BaseDistributionByCycleMetrics.java
- src/main/java/picard/analysis/CollectOxoGMetrics.java
- src/main/java/picard/analysis/CollectQualityYieldMetrics.java
- src/main/java/picard/analysis/CollectRawWgsMetrics.java
- src/main/java/picard/analysis/CollectWgsMetricsWithNonZeroCoverage.java
- src/main/java/picard/analysis/FingerprintingDetailMetrics.java
- src/main/java/picard/analysis/FingerprintingSummaryMetrics.java
- src/main/java/picard/analysis/GcBiasDetailMetrics.java
- src/main/java/picard/analysis/GcBiasSummaryMetrics.java
- src/main/java/picard/analysis/InsertSizeMetrics.java
- src/main/java/picard/analysis/JumpingLibraryMetrics.java
- src/main/java/picard/analysis/RnaSeqMetrics.java
- src/main/java/picard/analysis/RrbsCpgDetailMetrics.java
- src/main/java/picard/analysis/RrbsMetrics.java
- src/main/java/picard/analysis/RrbsSummaryMetrics.java
- src/main/java/picard/analysis/TheoreticalSensitivityMetrics.java
- src/main/java/picard/analysis/WgsMetrics.java
- src/main/java/picard/analysis/artifacts/ErrorSummaryMetrics.java
- src/main/java/picard/analysis/artifacts/SequencingArtifactMetrics.java
- src/main/java/picard/analysis/directed/HsMetrics.java
- src/main/java/picard/analysis/directed/TargetMetrics.java
- src/main/java/picard/analysis/directed/TargetedPcrMetrics.java
- src/main/java/picard/analysis/replicates/IndependentReplicateMetric.java
- src/main/java/picard/arrays/BafRegressMetrics.java
- src/main/java/picard/arrays/CollectArraysVariantCallingMetrics.java
- src/main/java/picard/arrays/GtcToVcf.java
- src/main/java/picard/arrays/VcfToAdpc.java
- src/main/java/picard/arrays/VerifyIDIntensityContaminationMetrics.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/commit/f088eabf57c8faf75ddc8831e06f6f97ad803ba7

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View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/commit/f088eabf57c8faf75ddc8831e06f6f97ad803ba7
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