[med-svn] [Git][med-team/igv][upstream] New upstream version 2.12.0+dfsg

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch upstream at Debian Med / igv


Commits:
b70aabd9 by Pierre Gruet at 2022-02-09T15:51:37+01:00
New upstream version 2.12.0+dfsg
- - - - -


30 changed files:

- .gitignore
- build.gradle
- scripts/test_suite.args
- src/main/java/module-info.java
- src/main/java/org/broad/igv/Globals.java
- src/main/java/org/broad/igv/batch/BatchRunner.java
- src/main/java/org/broad/igv/batch/CommandExecutor.java
- src/main/java/org/broad/igv/batch/CommandListener.java
- src/main/java/org/broad/igv/bbfile/BBFileReader.java
- src/main/java/org/broad/igv/bbfile/BBZoomLevels.java
- src/main/java/org/broad/igv/bbfile/RPTree.java
- src/main/java/org/broad/igv/bedpe/BedPEFeature.java
- src/main/java/org/broad/igv/bedpe/BedPEParser.java
- src/main/java/org/broad/igv/bedpe/InteractionTrack.java
- src/main/java/org/broad/igv/bigwig/BigWigDataSource.java
- src/main/java/org/broad/igv/data/CombinedDataSource.java
- src/main/java/org/broad/igv/data/GenomeSummaryData.java
- src/main/java/org/broad/igv/data/IGVDatasetParser.java
- src/main/java/org/broad/igv/data/expression/ExpressionFileParser.java
- src/main/java/org/broad/igv/data/expression/GeneToLocusHelper.java
- src/main/java/org/broad/igv/data/seg/SegmentFileParser.java
- src/main/java/org/broad/igv/feature/AbstractCacher.java
- src/main/java/org/broad/igv/feature/Mutation.java
- src/main/java/org/broad/igv/feature/genome/ChromosomeComparator.java
- src/main/java/org/broad/igv/feature/genome/Genome.java
- src/main/java/org/broad/igv/feature/genome/GenomeManager.java
- src/main/java/org/broad/igv/feature/genome/fasta/FastaIndex.java
- src/main/java/org/broad/igv/feature/genome/fasta/FastaIndexedSequence.java
- src/main/java/org/broad/igv/feature/genome/load/ChromSizesParser.java
- src/main/java/org/broad/igv/feature/genome/load/DotGenomeLoader.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/igv/-/commit/b70aabd9dc785c499ce5185ee6598571edbaaa65

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View it on GitLab: https://salsa.debian.org/med-team/igv/-/commit/b70aabd9dc785c499ce5185ee6598571edbaaa65
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