[med-svn] [Git][med-team/igv][master] 9 commits: New upstream version 2.12.0+dfsg

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch master at Debian Med / igv


Commits:
b70aabd9 by Pierre Gruet at 2022-02-09T15:51:37+01:00
New upstream version 2.12.0+dfsg
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ba222b84 by Pierre Gruet at 2022-02-09T15:53:36+01:00
Update upstream source from tag 'upstream/2.12.0+dfsg'

Update to upstream version '2.12.0+dfsg'
with Debian dir c41a84a6c48876063ede467f507984aaae6ae971
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41db5d15 by Pierre Gruet at 2022-02-09T15:58:32+01:00
Polishing d/copyright

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9f1d56df by Pierre Gruet at 2022-02-09T16:20:06+01:00
Removing superfluous file patterns in d/copyright

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422c61c8 by Pierre Gruet at 2022-02-09T16:24:21+01:00
Skipping more tests needing the network

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21f9ce65 by Pierre Gruet at 2022-02-09T16:24:31+01:00
Refreshing patches

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ad68eff1 by Pierre Gruet at 2022-02-09T16:36:13+01:00
Updating changelog

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78173725 by Pierre Gruet at 2022-02-09T20:44:18+01:00
Discarding other tests requiring network access

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bcd610f2 by Pierre Gruet at 2022-02-09T20:44:28+01:00
Upload to unstable

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30 changed files:

- .gitignore
- build.gradle
- debian/changelog
- debian/copyright
- debian/patches/gradle_dependencies.patch
- debian/patches/jide_dependency.patch
- debian/patches/old_gradle_name.patch
- debian/patches/omit_aws_stuff.patch
- debian/patches/series
- debian/patches/skip_tests_network.patch
- debian/patches/using_home_made_icons.patch
- scripts/test_suite.args
- src/main/java/module-info.java
- src/main/java/org/broad/igv/Globals.java
- src/main/java/org/broad/igv/batch/BatchRunner.java
- src/main/java/org/broad/igv/batch/CommandExecutor.java
- src/main/java/org/broad/igv/batch/CommandListener.java
- src/main/java/org/broad/igv/bbfile/BBFileReader.java
- src/main/java/org/broad/igv/bbfile/BBZoomLevels.java
- src/main/java/org/broad/igv/bbfile/RPTree.java
- src/main/java/org/broad/igv/bedpe/BedPEFeature.java
- src/main/java/org/broad/igv/bedpe/BedPEParser.java
- src/main/java/org/broad/igv/bedpe/InteractionTrack.java
- src/main/java/org/broad/igv/bigwig/BigWigDataSource.java
- src/main/java/org/broad/igv/data/CombinedDataSource.java
- src/main/java/org/broad/igv/data/GenomeSummaryData.java
- src/main/java/org/broad/igv/data/IGVDatasetParser.java
- src/main/java/org/broad/igv/data/expression/ExpressionFileParser.java
- src/main/java/org/broad/igv/data/expression/GeneToLocusHelper.java
- src/main/java/org/broad/igv/data/seg/SegmentFileParser.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/igv/-/compare/15792a105d7fd1742f2dc0cdaca46d7b1a33abe3...bcd610f2b91884515cde6d65d219c514744ca728

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View it on GitLab: https://salsa.debian.org/med-team/igv/-/compare/15792a105d7fd1742f2dc0cdaca46d7b1a33abe3...bcd610f2b91884515cde6d65d219c514744ca728
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