[med-svn] [Git][med-team/toil][master] 9 commits: New upstream version 5.6.0

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch master at Debian Med / toil


Commits:
536690e1 by Michael R. Crusoe at 2022-01-19T12:41:35+01:00
New upstream version 5.6.0
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24271b42 by Michael R. Crusoe at 2022-01-19T12:41:35+01:00
routine-update: New upstream version

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5afc675a by Michael R. Crusoe at 2022-01-19T12:41:41+01:00
Update upstream source from tag 'upstream/5.6.0'

Update to upstream version '5.6.0'
with Debian dir 2d19b4da72f2e8fb4976b0e44badde69c4d59e8f
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a43aa9b1 by Michael R. Crusoe at 2022-01-19T15:13:11+01:00
Refresh patches, retiring cwl_test_path, spelling, and test_with_less_memory

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4107bf8d by Michael R. Crusoe at 2022-01-19T15:13:11+01:00
routine-update: Ready to upload to unstable

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0e65d239 by Michael R. Crusoe at 2022-01-19T15:24:34+01:00
Skip the py-tes dependency for now.

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d9fa29c7 by Michael R. Crusoe at 2022-01-19T15:47:01+01:00
Skip testVirtualEnv

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9d3b5728 by Michael R. Crusoe at 2022-01-21T17:58:23+01:00
allow the cwltool version warning

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d52f2716 by Michael R. Crusoe at 2022-01-21T18:13:29+01:00
match the latest version of cwltool

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30 changed files:

- + .github/dependabot.yml
- + .github/workflows/codeql-analysis.yml
- .gitignore
- .gitlab-ci.yml
- + MANIFEST.in
- Makefile
- common.mk
- + contrib/admin/buildkit-deployment.yml
- contrib/admin/mypy-with-ignore.py
- + contrib/tes/funnel/kubernetes/setup.yml
- + contrib/typeshed/flask/__init__.pyi
- + contrib/typeshed/flask/helpers.pyi
- + contrib/typeshed/tes/__init__.py
- + contrib/typeshed/tes/client.pyi
- + contrib/typeshed/tes/models.pyi
- debian/changelog
- debian/control
- − debian/patches/cwl_test_path
- debian/patches/exit_code_exception
- debian/patches/no_galaxy_lib
- debian/patches/series
- debian/patches/setting_version.patch
- debian/patches/ship_tests
- + debian/patches/skip_py_tes_dep
- debian/patches/soften-mesos-deps
- debian/patches/soften-pydocker-dep
- − debian/patches/spelling
- − debian/patches/test_with_less_memory
- debian/rules
- debian/tests/control


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/toil/-/compare/dbdc28536cd520b412ff1548362939cc374eb55d...d52f271681e6e7685f9a70f5d17966a05a2415e1

-- 
View it on GitLab: https://salsa.debian.org/med-team/toil/-/compare/dbdc28536cd520b412ff1548362939cc374eb55d...d52f271681e6e7685f9a70f5d17966a05a2415e1
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