[med-svn] [Git][med-team/toil][upstream] New upstream version 5.6.0

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch upstream at Debian Med / toil


Commits:
536690e1 by Michael R. Crusoe at 2022-01-19T12:41:35+01:00
New upstream version 5.6.0
- - - - -


30 changed files:

- + .github/dependabot.yml
- + .github/workflows/codeql-analysis.yml
- .gitignore
- .gitlab-ci.yml
- + MANIFEST.in
- Makefile
- common.mk
- + contrib/admin/buildkit-deployment.yml
- contrib/admin/mypy-with-ignore.py
- + contrib/tes/funnel/kubernetes/setup.yml
- + contrib/typeshed/flask/__init__.pyi
- + contrib/typeshed/flask/helpers.pyi
- + contrib/typeshed/tes/__init__.py
- + contrib/typeshed/tes/client.pyi
- + contrib/typeshed/tes/models.pyi
- docker/Dockerfile.py
- docker/singularity-wrapper.sh
- docs/appendices/architecture.rst
- docs/appendices/environment_vars.rst
- docs/contributing/contributing.rst
- docs/developingWorkflows/developing.rst
- docs/developingWorkflows/toilAPIMethods.rst
- docs/gettingStarted/install.rst
- docs/index.rst
- docs/running/cliOptions.rst
- docs/running/cloud/kubernetes.rst
- + docs/running/server/Dockerfile
- + docs/running/server/docker-compose.yml
- + docs/running/server/wes.rst
- + requirements-aws.txt


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/toil/-/commit/536690e121bfa301dcebb54ced0e92daba52507c

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View it on GitLab: https://salsa.debian.org/med-team/toil/-/commit/536690e121bfa301dcebb54ced0e92daba52507c
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