[med-svn] [Git][med-team/busco][master] 6 commits: New upstream version 5.4.2

[Nilesh Patra (@nilesh)]

Nilesh Patra pushed to branch master at Debian Med / busco


Commits:
9ffe6868 by Nilesh Patra at 2022-07-29T18:27:30+05:30
New upstream version 5.4.2
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cad68471 by Nilesh Patra at 2022-07-29T18:52:41+05:30
Refresh, re-diff patches

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880e9452 by Nilesh Patra at 2022-07-29T18:52:52+05:30
Upload to unstable

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eeb5456d by Nilesh Patra at 2022-07-29T20:06:26+05:30
Fix bbmap instead of bbtools

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b3fb0798 by Nilesh Patra at 2022-07-29T20:06:26+05:30
Add depend on bbmap

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e8362d44 by Nilesh Patra at 2022-07-29T20:06:26+05:30
Upload to unstable

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30 changed files:

- CHANGELOG
- config/config.ini
- debian/changelog
- debian/control
- + debian/patches/find-bbmap-instead-of-bbtools.patch
- debian/patches/fix-and-disable-tests.patch
- debian/patches/series
- src/busco/Actions.py
- src/busco/AutoLineage.py
- src/busco/BuscoConfig.py
- src/busco/BuscoDownloadManager.py
- src/busco/BuscoLogger.py
- src/busco/BuscoPlacer.py
- src/busco/BuscoRunner.py
- src/busco/ConfigManager.py
- src/busco/_version.py
- src/busco/analysis/Analysis.py
- src/busco/analysis/BuscoAnalysis.py
- src/busco/analysis/GeneSetAnalysis.py
- src/busco/analysis/GenomeAnalysis.py
- src/busco/analysis/TranscriptomeAnalysis.py
- src/busco/busco_tools/Toolset.py
- src/busco/busco_tools/augustus.py
- src/busco/busco_tools/base.py
- + src/busco/busco_tools/bbtools.py
- src/busco/busco_tools/blast.py
- src/busco/busco_tools/hmmer.py
- src/busco/busco_tools/metaeuk.py
- src/busco/busco_tools/prodigal.py
- src/busco/busco_tools/sepp.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/busco/-/compare/ac6d8c81e7b5b99d9cbcd1838e6aaaee62f55ef1...e8362d44720c854a83d5c1a8c92122886fc3a41b

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View it on GitLab: https://salsa.debian.org/med-team/busco/-/compare/ac6d8c81e7b5b99d9cbcd1838e6aaaee62f55ef1...e8362d44720c854a83d5c1a8c92122886fc3a41b
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