[med-svn] [Git][med-team/toil][master] 7 commits: New upstream version 5.9.0

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch master at Debian Med / toil


Commits:
acde40b0 by Michael R. Crusoe at 2023-02-03T13:55:37+01:00
New upstream version 5.9.0
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79b35ab2 by Michael R. Crusoe at 2023-02-03T13:55:37+01:00
routine-update: New upstream version

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f913d15d by Michael R. Crusoe at 2023-02-03T13:55:44+01:00
Update upstream source from tag 'upstream/5.9.0'

Update to upstream version '5.9.0'
with Debian dir d830d6fb169fe4048deb2e91fbb5bc3cbfec7e99
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acf205f3 by Michael R. Crusoe at 2023-02-03T16:33:06+01:00
refresh patches

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242d5593 by Michael R. Crusoe at 2023-02-03T16:51:30+01:00
d/control: match build-deps to upstream

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5b70d739 by Michael R. Crusoe at 2023-02-03T18:48:35+01:00
run tests in parallel

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8ba8fdfc by Michael R. Crusoe at 2023-02-03T19:05:54+01:00
routine-update: Ready to upload to unstable

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30 changed files:

- .gitlab-ci.yml
- Makefile
- contrib/mypy-stubs/dill/_dill.pyi
- contrib/slurm-test/docker-compose.yml
- debian/changelog
- debian/control
- debian/patches/atomic_copy_as_alternative.patch
- debian/patches/exit_code_exception
- debian/patches/no_galaxy_lib
- debian/patches/setting_version.patch
- debian/rules
- debian/tests/control
- debian/tests/run-unit-tests
- docs/appendices/environment_vars.rst
- docs/developingWorkflows/toilAPIBatchsystem.rst
- docs/running/cliOptions.rst
- docs/running/cloud/amazon.rst
- docs/running/cloud/kubernetes.rst
- requirements-aws.txt
- requirements-cwl.txt
- requirements-dev.txt
- requirements-htcondor.txt
- src/toil/batchSystems/abstractBatchSystem.py
- src/toil/batchSystems/awsBatch.py
- src/toil/batchSystems/gridengine.py
- src/toil/batchSystems/htcondor.py
- src/toil/batchSystems/kubernetes.py
- src/toil/batchSystems/lsf.py
- src/toil/batchSystems/mesos/batchSystem.py
- src/toil/batchSystems/mesos/test/__init__.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/toil/-/compare/c73bf6c64a1c77bbc014052a0c2a700e3c0a36ef...8ba8fdfc0fe4798d18e9bdd8b64373103e27d659

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View it on GitLab: https://salsa.debian.org/med-team/toil/-/compare/c73bf6c64a1c77bbc014052a0c2a700e3c0a36ef...8ba8fdfc0fe4798d18e9bdd8b64373103e27d659
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