[med-svn] [Git][med-team/toil][upstream] New upstream version 5.9.0

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch upstream at Debian Med / toil


Commits:
acde40b0 by Michael R. Crusoe at 2023-02-03T13:55:37+01:00
New upstream version 5.9.0
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30 changed files:

- .gitlab-ci.yml
- Makefile
- contrib/mypy-stubs/dill/_dill.pyi
- contrib/slurm-test/docker-compose.yml
- docs/appendices/environment_vars.rst
- docs/developingWorkflows/toilAPIBatchsystem.rst
- docs/running/cliOptions.rst
- docs/running/cloud/amazon.rst
- docs/running/cloud/kubernetes.rst
- requirements-aws.txt
- requirements-cwl.txt
- requirements-dev.txt
- requirements-htcondor.txt
- src/toil/batchSystems/abstractBatchSystem.py
- src/toil/batchSystems/awsBatch.py
- src/toil/batchSystems/gridengine.py
- src/toil/batchSystems/htcondor.py
- src/toil/batchSystems/kubernetes.py
- src/toil/batchSystems/lsf.py
- src/toil/batchSystems/mesos/batchSystem.py
- src/toil/batchSystems/mesos/test/__init__.py
- src/toil/batchSystems/options.py
- src/toil/batchSystems/singleMachine.py
- src/toil/batchSystems/slurm.py
- src/toil/batchSystems/tes.py
- src/toil/batchSystems/torque.py
- src/toil/bus.py
- src/toil/common.py
- src/toil/cwl/__init__.py
- src/toil/cwl/cwltoil.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/toil/-/commit/acde40b066b5895cfd218223b1ea8706a2b36313

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