[med-svn] [Git][med-team/diamond-aligner][master] 4 commits: routine-update: New upstream version

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / diamond-aligner


Commits:
9d4cb9e4 by Andreas Tille at 2023-07-11T17:22:28+02:00
routine-update: New upstream version

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189bfac9 by Andreas Tille at 2023-07-11T17:22:29+02:00
New upstream version 2.1.8
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102c59bf by Andreas Tille at 2023-07-11T17:22:44+02:00
Update upstream source from tag 'upstream/2.1.8'

Update to upstream version '2.1.8'
with Debian dir 1e6891f066a05fb380137086b0623a9c6c5a2aba
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acd3e42b by Andreas Tille at 2023-07-11T17:27:15+02:00
routine-update: Ready to upload to unstable

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30 changed files:

- .gitignore
- CMakeLists.txt
- Dockerfile
- README.md
- debian/changelog
- debian/control
- src/ChangeLog
- src/align/align.cpp
- src/align/extend.cpp
- src/align/extend_chunk.h
- src/align/gapped_filter.cpp
- src/align/gapped_score.cpp
- src/align/global_ranking/extend.cpp
- src/align/global_ranking/table.cpp
- src/align/legacy/banded_swipe_pipeline.cpp
- src/align/legacy/query_mapper.cpp
- src/align/output.cpp
- src/align/ungapped.cpp
- src/basic/basic.cpp
- src/basic/config.cpp
- src/basic/config.h
- src/basic/const.h
- src/basic/hssp.cpp
- src/basic/match.h
- src/basic/packed_loc.h
- src/basic/seed_iterator.h
- src/basic/value.h
- src/chaining/greedy_align.cpp
- src/cluster/cascaded/cascaded.cpp
- src/cluster/cascaded/recluster.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/diamond-aligner/-/compare/4f42257f53d6490da5d2ecc2447244be6b649dd6...acd3e42bf387d2c39ba5945937b8a6fc7a526778

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View it on GitLab: https://salsa.debian.org/med-team/diamond-aligner/-/compare/4f42257f53d6490da5d2ecc2447244be6b649dd6...acd3e42bf387d2c39ba5945937b8a6fc7a526778
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