[med-svn] [Git][med-team/igv][master] 7 commits: New upstream version 2.18.5+dfsg

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch master at Debian Med / igv


Commits:
a62ff2fc by Pierre Gruet at 2024-10-12T22:27:48+02:00
New upstream version 2.18.5+dfsg
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77b92327 by Pierre Gruet at 2024-10-12T22:29:25+02:00
Update upstream source from tag 'upstream/2.18.5+dfsg'

Update to upstream version '2.18.5+dfsg'
with Debian dir 2bd50d372f8044a1fcf659d5e8dffdd6f84a461d
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0aca0f31 by Pierre Gruet at 2024-10-12T22:45:17+02:00
Raising Standards version to 4.7.0 (no change)

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fe0acf81 by Pierre Gruet at 2024-10-13T21:57:13+02:00
Refreshing the list of files to exclude when repacking

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759b1d5e by Pierre Gruet at 2024-10-13T21:58:32+02:00
Refreshing patches

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0582a073 by Pierre Gruet at 2024-10-13T21:58:49+02:00
Skipping more tests requiring the network

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ff54c12b by Pierre Gruet at 2024-10-13T21:59:19+02:00
Upload to unstable

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30 changed files:

- + .github/workflows/gradle.yml
- .gitignore
- CONTRIBUTING.md
- README.md
- build.gradle
- debian/changelog
- debian/control
- debian/copyright
- debian/patches/gradle_dependencies.patch
- debian/patches/no_spark.patch
- debian/patches/omit_aws_stuff.patch
- debian/patches/skip_tests_network.patch
- debian/patches/source_target_level.patch
- debian/patches/wrong_override.patch
- scripts/igv.sh
- scripts/igvtools
- scripts/mac.app/Contents/MacOS/IGV
- + scripts/mac.app/Contents/MacOS/main.c
- src/main/java/module-info.java
- src/main/java/org/broad/igv/data/DatasetDataSource.java
- src/main/java/org/broad/igv/data/WiggleParser.java
- src/main/java/org/broad/igv/data/seg/FreqData.java
- src/main/java/org/broad/igv/event/IGVEventBus.java
- src/main/java/org/broad/igv/event/ViewChange.java
- src/main/java/org/broad/igv/feature/Chromosome.java
- src/main/java/org/broad/igv/feature/FeatureUtils.java
- src/main/java/org/broad/igv/feature/SpliceJunctionFeature.java
- src/main/java/org/broad/igv/feature/dsi/DSITrack.java
- src/main/java/org/broad/igv/feature/genome/ChromAlias.java
- src/main/java/org/broad/igv/feature/genome/ChromAliasBB.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/igv/-/compare/27e1c8c6a1616977006883426aacc730352d127e...ff54c12b3e8c4520640202631e83dd2e208e24a7

-- 
View it on GitLab: https://salsa.debian.org/med-team/igv/-/compare/27e1c8c6a1616977006883426aacc730352d127e...ff54c12b3e8c4520640202631e83dd2e208e24a7
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