[med-svn] [Git][med-team/igv][upstream] New upstream version 2.18.5+dfsg

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch upstream at Debian Med / igv


Commits:
a62ff2fc by Pierre Gruet at 2024-10-12T22:27:48+02:00
New upstream version 2.18.5+dfsg
- - - - -


30 changed files:

- + .github/workflows/gradle.yml
- .gitignore
- CONTRIBUTING.md
- README.md
- build.gradle
- scripts/igv.sh
- scripts/igvtools
- scripts/mac.app/Contents/MacOS/IGV
- + scripts/mac.app/Contents/MacOS/main.c
- src/main/java/module-info.java
- src/main/java/org/broad/igv/data/DatasetDataSource.java
- src/main/java/org/broad/igv/data/WiggleParser.java
- src/main/java/org/broad/igv/data/seg/FreqData.java
- src/main/java/org/broad/igv/event/IGVEventBus.java
- src/main/java/org/broad/igv/event/ViewChange.java
- src/main/java/org/broad/igv/feature/Chromosome.java
- src/main/java/org/broad/igv/feature/FeatureUtils.java
- src/main/java/org/broad/igv/feature/SpliceJunctionFeature.java
- src/main/java/org/broad/igv/feature/dsi/DSITrack.java
- src/main/java/org/broad/igv/feature/genome/ChromAlias.java
- src/main/java/org/broad/igv/feature/genome/ChromAliasBB.java
- src/main/java/org/broad/igv/feature/genome/ChromAliasDefaults.java
- src/main/java/org/broad/igv/feature/genome/ChromAliasFile.java
- src/main/java/org/broad/igv/feature/genome/ChromAliasManager.java
- src/main/java/org/broad/igv/feature/genome/ChromAliasSource.java
- − src/main/java/org/broad/igv/feature/genome/ChromosomeComparator.java
- src/main/java/org/broad/igv/feature/genome/ChromosomeNameComparator.java
- src/main/java/org/broad/igv/feature/genome/Genome.java
- src/main/java/org/broad/igv/feature/genome/GenomeManager.java
- src/main/java/org/broad/igv/feature/genome/GenomeUtils.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/igv/-/commit/a62ff2fc3ca86376c0a621174eb5bee236f774a7

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View it on GitLab: https://salsa.debian.org/med-team/igv/-/commit/a62ff2fc3ca86376c0a621174eb5bee236f774a7
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