[Debian-med-packaging] RFS: mauve-aligner (was: Problem with Mauve biojava dependency)

[Andreas Tille]

Hi Afif,

thanks for the enhancements.  I realised that its always better to
verify with `apt-cache policy mauve-aligner` whether I forgot to push my
last changes.  As usual I forget to push once it is important for
somebody else. :-(  I merged your changes hopefully properly - please
check.  I'd also recommend that you simply use your just granted upload
permissions to do not a team upload but add yourself as Uploader if
you are using the package yourself (which I don't).

If you might have your reasons not to use your DM powers on the package
just let me know and ping me if you are happy with the state in Git.

Kind regards

      Andreas.

On Sat, Nov 21, 2015 at 12:37:32AM -0800, Afif Elghraoui wrote:
> Hello again,
> I have just pushed my changes to Alioth and the package is ready for
> uploading. I set the urgency of this upload to "high" because the GUI is
> basically nonfunctional unless the biojava dependency is installed
> manually. The alignment runs, but the results do not display.
> 
> Many thanks and regards
> Afif
> 
> -- 
> Afif Elghraoui | عفيف الغراوي
> http://afif.ghraoui.name
> 
> On الجمعـة 20 تشرين الثاني 2015 23:54, Afif Elghraoui wrote:
> > Hi, Andreas,
> > After you had packaged and backported Mauve (thanks for that, by the
> > way), I tried using it for some of my work and didn't find the graphical
> > interface functional. I hadn't gone into debugging it at the time since
> > I just used the command-line interface or my locally installed version.
> > 
> > Now I noticed a problem with the Artemis package (I just uploaded a
> > fixed version) that the biojava dependency was set to libbiojava1.7-java
> > by javahelper, but the biojava.jar (no version in the name) file
> > required for the program to work is in the package libbiojava-java.
> > Installing that package manually makes Artemis work. I suspected that
> > this is may be the same problem for the Mauve package and confirmed that
> > this is indeed the case.
> > 
> > I am going to push a solution to this in git. I'm also going to add a
> > .desktop file so that the graphical interface can be seen and launched
> > from the desktop environment menu.
> > 
> > Would you mind uploading those changes once they make it to git?
> > 
> > Many thanks and regards
> > Afif
> > 
> 
> 
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