[Debian-med-packaging] Bug#923457: test_likelihood_nh (Failed)

[Julien Y. Dutheil]

Dear Andreas,

Will give it a look asap.

Best,

Julien.

On Fri, Mar 8, 2019 at 9:34 AM Julien Yann Dutheil <
julien.dutheil at univ-montp2.fr> wrote:

> Dear Andreas,
>
> Will give it a look asap.
>
> Best,
>
> Julien.
>
> On Fri, Mar 8, 2019 at 6:30 AM Andreas Tille <tille at debian.org> wrote:
>
>> Hi Julien,
>>
>> after fixing bug #923457 I realised that the package does not
>> build on all architectures[1]. S390x fails with[2]
>>
>>  4/14 Test  #5: test_likelihood_nh ...............***Failed    2.44 sec
>>
>> / 1
>> - 2
>> \ 3
>> - 4
>> / 5
>> - 6
>> \ 7
>> - 8
>> / 9
>> - 10
>> \ 11 nodes loaded.
>> Theta0 set to 0.444785
>> Theta1 set to 0.137341
>> Theta2 set to 0.219281
>> Theta3 set to 0.759382
>> Theta4 set to 0.549516
>> Theta5 set to 0.925583
>> Theta6 set to 0.527333
>> Theta7 set to 0.891561
>> Theta8 set to 0.331932
>> Theta9 set to 0.523327
>> Initializing data structure............: Done.
>> Number of distinct sites...............: 363
>> Initializing data structure............: Done.
>> Number of distinct sites...............: 363
>>
>> Optimizing... / 1
>> Optimizing... - 2
>> Optimizing... \ 3
>> Optimizing... - 4
>> Optimizing... / 5
>> Optimizing... - 6
>> Optimizing... \ 7
>> Optimizing... - 8
>> Optimizing... / 9
>> Optimizing... - 10
>> Optimizing... \ 11
>> Optimizing... - 12
>> Optimizing... / 13
>> Optimizing... - 14
>>
>>
>> Optimizing... / 1
>> Optimizing... - 2
>> Optimizing... \ 3
>> Optimizing... - 4
>> Optimizing... / 5
>> Optimizing... - 6
>> Optimizing... \ 7
>> Optimizing... - 8
>> Optimizing... / 9
>> Optimizing... - 10
>> Optimizing... \ 11
>> Optimizing... - 12
>> Optimizing... / 13
>> Optimizing... - 14
>>
>> 15: 5347.92 15: 5347.92
>> 0.516673 0.516673
>> 0.184681 0.184681
>> 0.209158 0.209158
>> 0.795359 0.795359
>> 0.489372 0.489372
>> 0.918414 0.918414
>> 0.489537 0.489537
>> 0.913968 0.913968
>> 0.180359 0.180359
>> 0.797456 0.797456
>> Initializing data structure............: Done.
>> Number of distinct sites...............: 365
>> Initializing data structure............: Done.
>> Number of distinct sites...............: 365
>>
>> Optimizing... / 1
>> Optimizing... - 2
>> Optimizing... \ 3
>> Optimizing... - 4
>> Optimizing... / 5
>> Optimizing... - 6
>> Optimizing... \ 7
>> Optimizing... - 8
>> Optimizing... / 9
>> Optimizing... - 10
>> Optimizing... \ 11
>> Optimizing... - 12
>> Optimizing... / 13
>> Optimizing... - 14
>> Optimizing... \ 15
>> Optimizing... - 16
>> Optimizing... / 17
>>
>>
>> Optimizing... / 1
>> Optimizing... - 2
>> Optimizing... \ 3
>> Optimizing... - 4
>> Optimizing... / 5
>> Optimizing... - 6
>> Optimizing... \ 7
>> Optimizing... - 8
>> Optimizing... / 9
>> Optimizing... - 10
>> Optimizing... \ 11
>> Optimizing... - 12
>> Optimizing... / 13
>> Optimizing... - 14
>> Optimizing... \ 15
>> Optimizing... - 16
>> Optimizing... / 17
>>
>> 18: 5391.43 18: 5391.43
>> 0.60777 0.60777
>> 0.127151 0.127151
>> 0.189039 0.189039
>> 0.788612 0.788612
>> 0.564763 0.564763
>> 0.941319 0.941319
>> 0.565297 0.565297
>> 0.844854 0.844854
>> 0.357532 0.357532
>> 0.717998 0.717998
>> Initializing data structure............: Done.
>> Number of distinct sites...............: 375
>> Initializing data structure............: Done.
>> Number of distinct sites...............: 375
>>
>> Optimizing... / 1
>> Optimizing... - 2
>> Optimizing... \ 3
>> Optimizing... - 4
>> Optimizing... / 5
>> Optimizing... - 6
>> Optimizing... \ 7
>> Optimizing... - 8
>> Optimizing... / 9
>> Optimizing... - 10
>> Optimizing... \ 11
>> Optimizing... - 12
>> Optimizing... / 13
>> Optimizing... - 14
>>
>>
>> Optimizing... / 1
>> Optimizing... - 2
>> Optimizing... \ 3
>> Optimizing... - 4
>> Optimizing... / 5
>> Optimizing... - 6
>> Optimizing... \ 7
>> Optimizing... - 8
>> Optimizing... / 9
>> Optimizing... - 10
>> Optimizing... \ 11
>> Optimizing... - 12
>> Optimizing... / 13
>> Optimizing... - 14
>>
>> 15: 5401.83 15: 5401.83
>> 0.419181 0.419181
>> 0.140299 0.140299
>> 0.295 0.295
>> 0.900203 0.900203
>> 0.411605 0.411605
>> 0.919716 0.919716
>> 0.563041 0.563041
>> 0.813833 0.813833
>> 0.194868 0.194868
>> 0.801315 0.801315
>> 0.444785 0.514541 0.514541
>> 0.137341 0.15071 0.15071
>> 0.219281 0.231066 0.231066
>> 0.759382 0.828058 0.828058
>> 0.549516 0.48858 0.48858
>> 0.925583 0.926483 0.926483
>> 0.527333 0.539292 0.539292
>> 0.891561 0.857552 0.857552
>> 0.331932 0.244253 0.244253
>> 0.523327 0.772256 0.772256
>>
>>
>> ...
>>
>> 93% tests passed, 1 tests failed out of 14
>>
>> Total Test time (real) =  31.15 sec
>>
>> The following tests FAILED:
>>    5 - test_likelihood_nh (Failed)
>>
>>
>> I remember that I once had even a test failure on my local amd64 - so
>> this test might be a bit undetermined.  Please confirm this and I'd be
>> happy if you could send an *as simple as possible* patch or simply
>> deactivate the patch.  We are in deep freeze and need to find a quick
>> and also simple solution.
>>
>> Kind regards
>>
>>        Andreas.
>>
>>
>> [1] https://buildd.debian.org/status/package.php?p=libbpp-phyl
>> [2]
>> https://buildd.debian.org/status/fetch.php?pkg=libbpp-phyl&arch=s390x&ver=2.4.1-2&stamp=1551477555&raw=0
>>
>> --
>> http://fam-tille.de
>>
>>
>
> --
> Julien Y. Dutheil, Ph-D
> 0 (+49) 6421 178 986
>
> § Max Planck Institute for Evolutionary Biology
> Molecular Systems Evolution
> Department of Evolutionary Genetics
> Plön -- GERMANY
>
> § Institute of Evolutionary Sciences - Montpellier
> University of Montpellier 2 -- FRANCE
>


-- 
Julien Y. Dutheil, Ph-D
0 (+49) 4522 763 298

§ Max Planck Institute for Evolutionary Biology
Molecular Systems Evolution
Department of Evolutionary Genetics
Plön -- GERMANY

§ Institute of Evolutionary Sciences - Montpellier
University of Montpellier 2 -- FRANCE
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