[Debian-med-packaging] Please check hmmer2 autopkgtest

[Joshua Marshall]

Yes, that is correct.

On Fri, Aug 14, 2020 at 7:11 AM Andreas Tille <andreas at an3as.eu> wrote:

> Hi Joshua,
>
> in other words: The old release of 2.3.2 should be prefered over what
> was commited as 2.5j to Debian packaging Git.  Is this correct?
>
> Kind regards
>
>        Andreas.
>
> On Thu, Aug 13, 2020 at 10:07:05PM -0400, Joshua Marshall wrote:
> > So not great news, I didn't commit anything to version control because it
> > didn't get to stable.  It also doesn't look like anybody went over and
> > patched the 2.x branch.  I can't give the time needed to tame this.
> >
> > On Thu, Aug 13, 2020 at 12:44 PM Joshua Marshall <jrmarsha at mtu.edu>
> wrote:
> >
> > > Ed made some design decisions which don't make a ton of sense for
> > > software.  While the stated purpose of the programs is the same, they
> > > actually offer different sets of functionality.  My initial
> introduction to
> > > them, interpro scan, actually needed to use both versions because of
> this
> > > feature split.  I wouldn't trust my branch right now.  Each time I
> went in
> > > to fix or patch something up, it broke multiple other things.  I don't
> have
> > > a good answer for you.  I have HMM code ready for testing, but it
> requires
> > > C++20 features which I'm also having to implement and doesn't have the
> CLI
> > > wrapping or trained model yet.
> > >
> > > Let me muck around with it tonight and get back to you.  I may be able
> to
> > > patch it to a stable enough state where you can use it.  I remember
> leaving
> > > it fairly close to usable.
> > >
> > > On Thu, Aug 13, 2020 at 8:55 AM Andreas Tille <andreas at fam-tille.de>
> > > wrote:
> > >
> > >> Hi Joshua,
> > >>
> > >> On Wed, Aug 12, 2020 at 12:23:16PM -0400, Joshua Marshall wrote:
> > >> > I've been poking at it here and there.  The thing is wound pretty
> tight
> > >> so
> > >> > I've just taken to a group up rework.  Check upstream for actual
> > >> > support--he won't even talk to me.  Guy can get pretty dramatic.
> > >>
> > >> But what is your personal opinion about the code you commited to
> > >>
> > >>     https://github.com/MichiganTech/hmmer
> > >>
> > >> Are you using it?  Does it work for you?  Do you think it is worth to
> > >> maintain a hmmer2 version in the long run despite hmmer3 is out?
> > >>
> > >> Kind regards
> > >>
> > >>       Andreas.
> > >>
> > >> --
> > >> http://fam-tille.de
> > >>
> > >
>
> --
> http://fam-tille.de
>
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