[Debian-pan-maintainers] Bug#1100816: orange-spectroscopy: FTBFS: AssertionError: Arrays are not almost equal to 4 decimals

Santiago Vila sanvila at debian.org
Wed Mar 19 01:12:29 GMT 2025 

Package: src:orange-spectroscopy
Version: 0.8.1-2
Severity: serious
Tags: ftbfs trixie sid

Dear maintainer:

During a rebuild of all packages in unstable, your package failed to build:

--------------------------------------------------------------------------------
[...]
 debian/rules clean
dh clean --with sphinxdoc --buildsystem=pybuild
   dh_auto_clean -O--buildsystem=pybuild
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules binary
dh binary --with sphinxdoc --buildsystem=pybuild
   dh_update_autotools_config -O--buildsystem=pybuild
   dh_autoreconf -O--buildsystem=pybuild
   dh_auto_configure -O--buildsystem=pybuild
   dh_auto_build -O--buildsystem=pybuild
I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module
I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy  
* Building wheel...

[... snipped ...]

    ret = ret.dtype.type(ret / rcount)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_als.py: 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_atm_corr.py: 10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_conversion.py: 3 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_cut.py: 2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_despike.py: 2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_emsc.py: 20 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_integrate.py: 16 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_interpolate.py: 20 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_me_emsc.py: 10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owhyper.py: 1 warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owinterpolate.py: 2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owspectra.py: 1 warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owspectralseries.py: 1 warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py: 72 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_readers.py: 1 warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_tile_reader.py: 2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_xas.py: 4 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_als.py: 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_atm_corr.py: 10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_conversion.py: 3 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_cut.py: 2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_despike.py: 2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_emsc.py: 20 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_integrate.py: 16 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_interpolate.py: 20 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_me_emsc.py: 10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owhyper.py: 1 warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owinterpolate.py: 2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owspectra.py: 1 warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owspectralseries.py: 1 warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 72 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_readers.py: 1 warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_tile_reader.py: 2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_xas.py: 4 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52: UserWarning: _InterpolateCommon should define __eq__ and __hash__ to be used for compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_atm_corr.py: 42 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_editor_atm_corr.py: 9 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py: 4 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_atm_corr.py: 42 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_editor_atm_corr.py: 10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 4 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52: UserWarning: _AtmCorr should define __eq__ and __hash__ to be used for compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_atm_corr.py: 42 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_editor_atm_corr.py: 9 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py: 4 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_atm_corr.py: 42 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_editor_atm_corr.py: 10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 4 warnings
  /usr/lib/python3/dist-packages/Orange/data/variable.py:546: UserWarning: SelectColumn should define __eq__ and __hash__ to be used for compute_value
  or set InheritEq = True if inherited methods suffice
    var = type(self)(name=name or self.name,

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_atm_corr.py: 7 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_atm_corr.py: 7 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/atm_corr.py:102: RuntimeWarning: invalid value encountered in divide
    az = az**3 / az2sum

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_conversion.py: 2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py: 9 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py: 10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_tile_reader.py: 2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_conversion.py: 2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 9 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_tile_reader.py: 2 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52: UserWarning: _SavitzkyGolayCommon should define __eq__ and __hash__ to be used for compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_despike.py: 11 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_editor_spikeremoval.py: 10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py: 7 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_despike.py: 11 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_editor_spikeremoval.py: 9 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 7 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52: UserWarning: _DespikeCommon should define __eq__ and __hash__ to be used for compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_despike.py::TestSpikeRemoval::test_spikes
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_despike.py::TestSpikeRemoval::test_spikes
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/__init__.py:874: RuntimeWarning: Mean of empty slice
    row_out[i] = np.nanmean(row_in[w2])

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_editor_baseline.py: 1 warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py: 11 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_editor_baseline.py: 1 warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 11 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52: UserWarning: _RubberbandBaselineCommon should define __eq__ and __hash__ to be used for compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_editor_emsc.py: 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_emsc.py: 87 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py: 4 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_editor_emsc.py: 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_emsc.py: 87 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 4 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52: UserWarning: _EMSC should define __eq__ and __hash__ to be used for compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_editor_gaussian.py: 10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py: 7 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py: 10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_tile_reader.py: 2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_editor_gaussian.py: 11 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 7 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_tile_reader.py: 2 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52: UserWarning: _GaussianCommon should define __eq__ and __hash__ to be used for compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_editor_me_emsc.py: 27 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_me_emsc.py: 68 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py: 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_editor_me_emsc.py: 26 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_me_emsc.py: 68 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 6 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52: UserWarning: _ME_EMSC should define __eq__ and __hash__ to be used for compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_editor_normalize.py: 26 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py: 10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py: 37 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_editor_normalize.py: 27 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 37 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52: UserWarning: _NormalizeCommon should define __eq__ and __hash__ to be used for compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_editor_normalize.py: 2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py: 42 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_editor_normalize.py: 2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 42 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52: UserWarning: _NormalizeReferenceCommon should define __eq__ and __hash__ to be used for compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_emsc.py: 12 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_emsc.py: 12 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/emsc.py:140: RuntimeWarning: invalid value encountered in divide
    corrected = corrected/m[self.order+1+n_badspec]

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_integrate.py: 72 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owhyper.py: 47 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owintegrate.py: 19 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpeakfit.py: 1 warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py: 7 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py: 13 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_tile_reader.py: 2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_integrate.py: 72 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owhyper.py: 47 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owintegrate.py: 18 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpeakfit.py: 1 warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 7 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 13 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_tile_reader.py: 2 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/integrate.py:28: UserWarning: _IntegrateCommon should define __eq__ and __hash__ to be used for compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_integrate.py: 104 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owhyper.py: 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owintegrate.py: 46 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpeakfit.py: 1 warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py: 8 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py: 3 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_tile_reader.py: 12 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_integrate.py: 104 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owhyper.py: 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owintegrate.py: 44 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpeakfit.py: 1 warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 8 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 3 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_tile_reader.py: 12 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/integrate.py:105: DeprecationWarning: `trapz` is deprecated. Use `trapezoid` instead, or one of the numerical integration functions in `scipy.integrate`.
    return np.trapz(y_s, x, axis=1)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_integrate.py: 5 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owhyper.py: 2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owintegrate.py: 11 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_integrate.py: 5 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owhyper.py: 2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owintegrate.py: 11 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/integrate.py:147: DeprecationWarning: `trapz` is deprecated. Use `trapezoid` instead, or one of the numerical integration functions in `scipy.integrate`.
    return np.trapz(y_s, x_s, axis=1)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_irfft.py::TestIRFFT::test_agilent_fft_ab
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_irfft.py:97: RuntimeWarning: invalid value encountered in log10
    ab = np.log10(rsc / ssc)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_irfft.py::TestIRFFT::test_multi_ab
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_irfft.py:134: RuntimeWarning: invalid value encountered in log10
    ab = np.log10(rsc / ssc)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_me_emsc.py: 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_me_emsc.py: 6 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/me_emsc.py:142: RuntimeWarning: invalid value encountered in divide
    corrected = corrected / m[1 + self.ncomp]

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owalignstack.py::test_image
  /usr/lib/python3/dist-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but .pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owalignstack.py::test_image returned array([[0., 1., 0., 0., 0., 0., 1.],
         [0., 0., 5., 0., 0., 0., 1.],
         [0., 0., 0., 3., 0., 0., 1.],
         [0., 0., 0., 0., 1., 0., 1.],
         [0., 0., 0., 0., 0., 1., 1.]]), which will be an error in a future version of pytest.  Did you mean to use `assert` instead of `return`?
    warnings.warn(

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owcos.py::TestOWCOS::test_calc_cos
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owcos.py::TestOWCOS::test_calc_cos
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/widgets/owcos.py:48: RuntimeWarning: divide by zero encountered in divide
    hn = np.where(i != j, 1 / (np.pi * (j - i)), 0)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owfft.py::TestOWFFT::test_calculation
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owfft.py:111: RuntimeWarning: invalid value encountered in log10
    calc_abs = np.log10(rsc.X / ssc.X)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owhyper.py::TestReadCoordinates::test_index_nan
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owhyper.py::TestOWHyper::test_strange
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owhyper.py::TestOWHyper::test_unknown_values_axes
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owhyper.py::TestReadCoordinates::test_index_nan
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owhyper.py::TestOWHyper::test_strange
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owhyper.py::TestOWHyper::test_unknown_values_axes
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/utils/__init__.py:68: RuntimeWarning: invalid value encountered in cast
    return np.round(positions).astype(int), np.isnan(positions)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owhyper.py: 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owhyper.py: 6 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/widgets/owhyper.py:652: RuntimeWarning: Mean of empty slice
    np.nanmean(col_df.iloc[i:i+bin_sz,j:j+bin_sz].to_numpy())

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpeakfit.py: 14 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpeakfit.py: 14 warnings
  /usr/lib/python3/dist-packages/lmfit/jsonutils.py:30: DeprecationWarning: Please import `gaussian` from the `scipy.signal.windows` namespace; the `scipy.signal.windows.windows` namespace is deprecated and will be removed in SciPy 2.0.0.
    t = getattr(module, oname, None)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpeakfit.py: 32 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpolar.py: 10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpeakfit.py: 32 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpolar.py: 10 warnings
  /usr/lib/python3.13/multiprocessing/popen_fork.py:67: DeprecationWarning: This process (pid=10578) is multi-threaded, use of fork() may lead to deadlocks in the child.
    self.pid = os.fork()

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpeakfit.py::TestOWPeakFit::test_allint_indv
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpeakfit.py::TestOWPeakFit::test_allint_indv
  /usr/lib/python3/dist-packages/asteval/asteval.py:922: RuntimeWarning: overflow encountered in exp
    out = func(*args, **keywords)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpeakfit.py::TestOWPeakFit::test_allint_indv
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpeakfit.py::TestOWPeakFit::test_allint_indv
  /usr/lib/python3/dist-packages/asteval/astutils.py:263: RuntimeWarning: invalid value encountered in scalar subtract
    ast.Sub: lambda a, b: a - b,

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpeakfit.py: 15 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpeakfit.py: 15 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/widgets/peakfit_compute.py:30: DeprecationWarning: `trapz` is deprecated. Use `trapezoid` instead, or one of the numerical integration functions in `scipy.integrate`.
    output[col] = np.trapz(np.broadcast_to(comps[comp.prefix], x.shape), sorted_x)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpls.py: 22 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpls.py: 22 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/models/pls.py:49: UserWarning: _PLSCommonTransform should define __eq__ and __hash__ to be used for compute_shared
    super().__init__(transform)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpls.py: 22 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpls.py: 22 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/models/pls.py:85: UserWarning: PLSProjector should define __eq__ and __hash__ to be used for compute_value
  or set InheritEq = True if inherited methods suffice
    return ContinuousVariable(name, compute_value=PLSProjector(transformer, i))

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpls.py: 19 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpls.py: 19 warnings
  /usr/lib/python3/dist-packages/orangewidget/gui.py:2073: UserWarning: decorate OWPLS.apply with @gui.deferred and then explicitly call apply.now or apply.deferred.
    warnings.warn(

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpolar.py: 12 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpolar.py: 12 warnings
  /usr/lib/python3/dist-packages/orangewidget/utils/listview.py:119: DeprecationWarning: ListViewSearch is deprecated and will be removed in upcoming releases. Use ListViewFilter instead.
    warnings.warn(("ListViewSearch is deprecated and will be removed " + "in upcoming releases. Use ListViewFilter instead."),

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py: 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py: 9 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 9 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52: UserWarning: _PCAReconstructCommon should define __eq__ and __hash__ to be used for compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py: 7 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py: 52 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_tile_reader.py: 2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 7 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 52 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_tile_reader.py: 2 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52: UserWarning: _TransmittanceCommon should define __eq__ and __hash__ to be used for compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py: 7 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py: 10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 7 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 10 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52: UserWarning: _ShiftAndScaleCommon should define __eq__ and __hash__ to be used for compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py: 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py: 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 6 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52: UserWarning: _MNFCommon should define __eq__ and __hash__ to be used for compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py: 7 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_xas.py: 18 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 7 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_xas.py: 18 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52: UserWarning: _XASnormalizationCommon should define __eq__ and __hash__ to be used for compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py: 4 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_xas.py: 11 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 4 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_xas.py: 11 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52: UserWarning: _ExtractEXAFSCommon should define __eq__ and __hash__ to be used for compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py::TestAllPreprocessors::test_allpreproc_indv_empty
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestPCADenoising::test_no_samples
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestMNFDenoising::test_no_samples
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py::TestAllPreprocessors::test_allpreproc_indv_empty
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestPCADenoising::test_no_samples
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestMNFDenoising::test_no_samples
  /usr/lib/python3/dist-packages/Orange/data/table.py:219: UserWarning: <class 'numpy.ndarray'> must return a column, not 2d array
    warnings.warn(err)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py::TestAllPreprocessors::test_allpreproc_indv_empty
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py::TestAllPreprocessors::test_allpreproc_indv_empty
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/widgets/preprocessors/atm_corr.py:108: RuntimeWarning: All-NaN slice encountered
    self.preview_data_max = np.nanmax(spectra_mean(data.X))

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owspectralseries.py: 14 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owspectralseries.py: 14 warnings
  /usr/lib/python3/dist-packages/Orange/widgets/gui.py:483: DeprecationWarning: Argument 'valueType' is deprecated and ignored
    warnings.warn("Argument 'valueType' is deprecated and ignored",

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py: 42 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 42 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52: UserWarning: _SpSubtractCommon should define __eq__ and __hash__ to be used for compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py: 5 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 5 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/transform.py:97: RuntimeWarning: divide by zero encountered in divide
    transd = data.X / ref_X

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestTransmittance::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestTransmittance::test_no_infs
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/transform.py:97: RuntimeWarning: invalid value encountered in divide
    transd = data.X / ref_X

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py: 51 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_tile_reader.py: 2 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 51 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_tile_reader.py: 2 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52: UserWarning: _AbsorbanceCommon should define __eq__ and __hash__ to be used for compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py: 5 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 5 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/transform.py:33: RuntimeWarning: divide by zero encountered in log10
    np.log10(absd, absd)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestAbsorbance::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestAbsorbance::test_no_infs
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/transform.py:38: RuntimeWarning: divide by zero encountered in log10
    absd = np.log10(data.X)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py: 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 6 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/transform.py:32: RuntimeWarning: divide by zero encountered in divide
    absd = ref_X / data.X

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestAbsorbance::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestAbsorbance::test_no_infs
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/transform.py:32: RuntimeWarning: invalid value encountered in divide
    absd = ref_X / data.X

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestNormalize::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestNormalize::test_no_infs
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/__init__.py:402: RuntimeWarning: invalid value encountered in divide
    data.X /= norm_data.X

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestNormalize::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestNormalize::test_no_infs
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/__init__.py:420: RuntimeWarning: invalid value encountered in divide
    data.X = data.X / (max - min)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py: 5 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 5 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/__init__.py:462: RuntimeWarning: divide by zero encountered in divide
    return replace_infs(data.X / ref_X)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py: 42 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 42 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52: UserWarning: _NormalizePhaseReferenceCommon should define __eq__ and __hash__ to be used for compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestNormalizeReference::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestNormalizeReference::test_no_infs
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/__init__.py:462: RuntimeWarning: invalid value encountered in divide
    return replace_infs(data.X / ref_X)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_readers.py::TestOmnicMapReader::test_read
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_readers.py::TestOmnicMapReader::test_read
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/utils/pymca5/OmnicMap.py:148: RuntimeWarning: invalid value encountered in scalar divide
    deltaY = (yPositions[-1] - yPositions[0]) / (self.__nFiles - 1)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_tile_reader.py: 5 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_tile_reader.py: 5 warnings
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/widgets/owtilefile.py:121: DeprecationWarning: 'addSpace' has been deprecated. Use gui.separator instead.
    vbox = gui.radioButtons(None, self, "source", box=True, addSpace=True,

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_xas.py::TestXASnormalization::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_xas.py::TestXASnormalization::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_xas.py::TestXASnormalization::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_xas.py::TestXASnormalization::test_no_infs
  /usr/lib/python3/dist-packages/extranormal3/normal_xas.py:83: RuntimeWarning: invalid value encountered in divide
    return numpy.array((spectrum[1]-preedge_fitcurve[1]-flattening)/norm_const), norm_const

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_xas.py::TestExtractEXAFS::test_file
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_xas.py::TestExtractEXAFS::test_file
  /usr/lib/python3/dist-packages/extranormal3/extra_exafs.py:96: RuntimeWarning: divide by zero encountered in divide
    sigma=1./k_interp**kweight

.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_irfft.py::TestIRFFT::test_agilent_fft_ab
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_irfft.py:97: RuntimeWarning: invalid value encountered in log10
    ab = np.log10(rsc / ssc)

.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_irfft.py::TestIRFFT::test_multi_ab
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_irfft.py:134: RuntimeWarning: invalid value encountered in log10
    ab = np.log10(rsc / ssc)

.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owalignstack.py::test_image
  /usr/lib/python3/dist-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but .pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owalignstack.py::test_image returned array([[0., 1., 0., 0., 0., 0., 1.],
         [0., 0., 5., 0., 0., 0., 1.],
         [0., 0., 0., 3., 0., 0., 1.],
         [0., 0., 0., 0., 1., 0., 1.],
         [0., 0., 0., 0., 0., 1., 1.]]), which will be an error in a future version of pytest.  Did you mean to use `assert` instead of `return`?
    warnings.warn(

.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owfft.py::TestOWFFT::test_calculation
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owfft.py:111: RuntimeWarning: invalid value encountered in log10
    calc_abs = np.log10(rsc.X / ssc.X)

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
=========================== short test summary info ============================
FAILED orangecontrib/spectroscopy/tests/test_xas.py::TestExtractEXAFS::test_file - AssertionError: 
Arrays are not almost equal to 4 decimals

Mismatched elements: 8 / 8 (100%)
Max absolute difference among violations: 0.00066078
Max relative difference among violations: 0.00191092
 ACTUAL: array([-0.3465, -0.3459, -0.3444, -0.3419, -0.3386, -0.3344, -0.3294,
       -0.3237])
 DESIRED: array([-0.3458, -0.3453, -0.3438, -0.3414, -0.3381, -0.3339, -0.329 ,
       -0.3233])
FAILED tests/test_xas.py::TestExtractEXAFS::test_file - AssertionError: 
Arrays are not almost equal to 4 decimals

Mismatched elements: 8 / 8 (100%)
Max absolute difference among violations: 0.00066078
Max relative difference among violations: 0.00191092
 ACTUAL: array([-0.3465, -0.3459, -0.3444, -0.3419, -0.3386, -0.3344, -0.3294,
       -0.3237])
 DESIRED: array([-0.3458, -0.3453, -0.3438, -0.3414, -0.3381, -0.3339, -0.329 ,
       -0.3233])
= 2 failed, 1520 passed, 378 skipped, 192 deselected, 3345 warnings in 162.79s (0:02:42) =
Widgets left: 0    Max widgets: 24167 

E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build; python3.13 -m pytest --verbosity=2 -k "not Mixin"
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.13 returned exit code 13
make: *** [debian/rules:7: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------

The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:

https://people.debian.org/~sanvila/build-logs/202503/

About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.

If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:orange-spectroscopy, so that this is still
visible in the BTS web page for this package.

Thanks.

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