[Debian-pan-maintainers] Bug#1033687: unblock: debian-pan/0.4
Andreas Tille
tille at debian.org
Thu Mar 30 06:58:27 BST 2023
Package: release.debian.org
Severity: normal
User: release.debian.org at packages.debian.org
Usertags: unblock
X-Debbugs-Cc: debian-pan at packages.debian.org, debian-pan-maintainers at alioth-lists.debian.net, picca at debian.org
Control: affects -1 + src:debian-pan
Please unblock package debian-pan
(Please provide enough (but not too much) information to help
the release team to judge the request efficiently. E.g. by
filling in the sections below.)
[ Reason ]
Debian PAN is a set of metapackages that was unfortunately out
of focus before the freeze. It reflects the current state of
the archive of the dependant packages and thus should show up
in bookworm.
[ Impact ]
Users would get an old-fashioned package dependency status with
the old version of debian-pan.
[ Tests ]
Unfortunately we do not have any means to test Blends metapackages.
[ Risks ]
The code is trivial - actually there is no real code inside
these packages, just dependencies from other packages.
[ Checklist ]
[x] all changes are documented in the d/changelog
of the 0.4~exp package which contained new metapackages
and thus needed to pass new
[x] I reviewed all changes and I approve them
[x] attach debdiff against the package in testing
I admit the debdiff is way longer than usually acceptable
in unblock requests. It contains lots of changes that
were assembled over a long time in Git. However, these
changes were needed to make the package sensible at all.
I admit it contains also spelling fixes, well - its
finally about user experience when reading the descriptions
[ Other info ]
It might happen (as for all other Blends metapackages) that some
additional version needs to be unblocked. This is in case some
dependency will be removed in the freeze process. However, in
this case the changes will be really minimal.
Kind regards and thanks a lot for working on the Debian release
Andreas.
unblock debian-pan/0.4
-------------- next part --------------
diff -Nru debian-pan-0.3/config/control debian-pan-0.4/config/control
--- debian-pan-0.3/config/control 2021-02-28 14:43:03.000000000 +0100
+++ debian-pan-0.4/config/control 2023-03-06 12:01:06.000000000 +0100
@@ -7,4 +7,19 @@
.
These are the pan related metapackages in the PAN Blend project:
.
- * pan-something do something # FIXME
+ pan-coherent-diffraction: coherent diffraction software
+ pan-control-systems: control systems
+ pan-control-systems-dev: control system development packages
+ pan-data-reduction-frameworks: data reduction frameworks
+ pan-data-reduction-frameworks-dev: data reduction frameworks dev
+ pan-diffraction: diffraction software suit
+ pan-grazing-incidence: grazing incidence X-ray photon and neutron diffraction
+ pan-imaging: imaging software
+ pan-machine-learning: machine learning software
+ pan-modelling: modeling software
+ pan-mx: macro molecular diffraction
+ pan-powder: powder diffraction
+ pan-small-angle-scattering: small angle scattering
+ pan-spectroscopy: X-Rays and Neutron spectroscopy
+ pan-tomography: photons and neutrons (PAN) Blend tomography
+ pan-xas: EXAFS and XANES
diff -Nru debian-pan-0.3/debian/changelog debian-pan-0.4/debian/changelog
--- debian-pan-0.3/debian/changelog 2021-02-28 14:43:03.000000000 +0100
+++ debian-pan-0.4/debian/changelog 2023-03-06 12:01:06.000000000 +0100
@@ -1,3 +1,109 @@
+debian-pan (0.4) unstable; urgency=medium
+
+ * Team upload.
+ * Spelling issues
+ * Fix description of data-reduction-frameworks-dev
+
+ -- Andreas Tille <tille at debian.org> Mon, 06 Mar 2023 12:01:06 +0100
+
+debian-pan (0.4~exp) experimental; urgency=medium
+
+ * Team upload.
+
+ [ Picca Fr?d?ric-Emmanuel ]
+ * updated the task.
+
+ [ Andreas Tille ]
+ * Fix debian/copyright
+ * Standards-Version: 4.6.2
+
+ * start of automatic changelog entry *
+
+ * Changes in metapackage dependencies
+ -pan-coherent-diffraction
+ added:
+ Recommends: facet-analyser, python3-moviepy
+ -pan-data-reduction-frameworks
+ added:
+ Recommends: python3-descartes, python3-periodictable, looktxt,
+ python3-pweave, python3-tables, python3-leather,
+ python-ipywidgets-doc, python3-sklearn, python3-mplcursors,
+ python-sklearn-doc, labplot, python3-bcolz, pandoc,
+ python3-dask, vitables, python-agate-doc, python3-skimage,
+ h5utils, hdf-compass, hdf5-tools, grads, python3-agate,
+ python3-opencv, python3-h5netcdf, view3dscene, python3-joypy,
+ python3-mpltoolkits.basemap, python3-xraydb,
+ python-tables-doc, python3-traitlets, python3-numpy-groupies,
+ python3-colorcet, libxrl-dev, libxrl11, python3-mpi4py, lz4,
+ python3-netcdf4, python3-gmplot, admesh, bitshuffle, xpython,
+ bcolz-doc, python3-zarr, zstd, clpeak, python3-mplexporter,
+ python3-skbio, tifffile, python3-ipywidgets,
+ python3-mpl-scatter-density, python3-colormap,
+ python3-seaborn, python3-sklearn-pandas, python3-graphviz,
+ python3-ipyparallel, python3-xarray, python3-procrunner,
+ python-skbio-doc, python3-h5py, python3-mpld3,
+ libjulia-openblas64, texlive-science, python-mpi4py-doc,
+ python3-h5sparse, python3-pandas, python3-pytest-mpl,
+ python3-palettable, python3-xelatex, python3-tifffile,
+ python3-pyct, python3-cycler, python-skimage-doc,
+ qemu-web-desktop, python3-pyvkfft, python-dask-doc,
+ python3-matplotlib
+ -pan-diffraction
+ added:
+ Recommends: python3-moviepy, libxy-dev, fityk, cif2hkl, libccp4-data,
+ python3-dials-data, objcryst-fox, libccp4-dev,
+ debichem-crystallography, python3-binoculars, python3-pyfai,
+ density-fitness, python-silx-doc, gcrystal, python3-pyxrd,
+ gir1.2-hkl-5.0, libxy-bin, python-pyfai-doc, libhkl-dev,
+ ghkl, libhkl-doc, python3-silx, python3-pyobjcryst,
+ binoculars-doc, pyfai, silx, dioptas, libobjcryst
+ Suggests: pynx
+ -pan-mx
+ added:
+ Recommends: python3-dials-data, python3-extra-data, python3-cctbx,
+ python3-mrcfile
+ removed:
+ Suggests: powder
+ -pan-powder
+ added:
+ Recommends: python3-pyxrd, dioptas
+ -pan-small-angle-scattering
+ added:
+ Recommends: python3-sasview, python3-sasmodels, dioptas,
+ python-sasmodels-doc, sasmodels-private-libs,
+ python3-bioxtasraw, sasview-doc, python3-freesas
+ -pan-spectroscopy
+ added:
+ Recommends: spview, pymca, python3-phonopy, dmrgpp, python3-pymatgen,
+ python3-xrstools, navarp, python3-pyimagetool, etsf-io,
+ mantis-xray, python3-spectral
+ -pan-tomography
+ added:
+ Recommends: geomview, meshlab, paraview-doc, python3-freeart,
+ facet-analyser, plastimatch, python3-pyhst2-cuda,
+ python3-tomopy, ctsim-doc, ctsim-help, ufo-core-doc, tomopy,
+ python3-paraview, python3-tomogui, ufo-filters-doc,
+ python3-astra-toolbox, dioptas, octave-astra-toolbox,
+ gir1.2-ufo-1.0, paraview-dev, ctsim, meshio-tools, rheolef
+ Suggests: tomogui, tomoj, tomodata
+ removed:
+ Recommends: libufo-bin
+ Suggests: tomopy, freeart, python3-astra-toolbox, octave-astra-toolbox,
+ python3-pyhst2-cuda
+ -pan-xas
+ added:
+ Recommends: ifeffit, feff85, horae, python3-xraylarch
+ * New metapackages:
+ -pan-imaging
+ -pan-machine-learning
+ -pan-grazing-incidence
+ -pan-modelling
+ * Removed metapackages:
+ - pan-microscopy
+ - pan-gid
+
+ -- Andreas Tille <tille at debian.org> Mon, 27 Feb 2023 10:26:42 +0100
+
debian-pan (0.3) unstable; urgency=medium
* source upload
diff -Nru debian-pan-0.3/debian/control debian-pan-0.4/debian/control
--- debian-pan-0.3/debian/control 2021-02-28 14:43:03.000000000 +0100
+++ debian-pan-0.4/debian/control 2023-03-06 12:01:06.000000000 +0100
@@ -2,11 +2,11 @@
Source: debian-pan
Section: science
Priority: optional
-Maintainer: Debian Science Team <debian-science-maintainers at lists.alioth.debian.org>
+Maintainer: Debian Pan Team <debian-pan-maintainers at alioth-lists.debian.net>
Uploaders: Picca Fr?d?ric-Emmanuel <picca at debian.org>
Build-Depends: debhelper-compat (= 12)
Build-Depends-Indep: blends-dev (>= 0.6.15)
-Standards-Version: 4.5.0
+Standards-Version: 4.6.2
Homepage: https://wiki.debian.org/DebianPAN
Vcs-Browser: https://salsa.debian.org/blends-team/pan
Vcs-Git: https://salsa.debian.org/blends-team/pan.git
@@ -28,7 +28,38 @@
.
These are the pan related metapackages in the PAN Blend project:
.
- * pan-something do something # FIXME
+ pan-coherent-diffraction: coherent diffraction software
+ pan-control-systems: control systems
+ pan-control-systems-dev: control system development packages
+ pan-data-reduction-frameworks: data reduction frameworks
+ pan-data-reduction-frameworks-dev: data reduction frameworks dev
+ pan-diffraction: diffraction software suit
+ pan-grazing-incidence: grazing incidence X-ray photon and neutron diffraction
+ pan-imaging: imaging software
+ pan-machine-learning: machine learning software
+ pan-modelling: modeling software
+ pan-mx: macro molecular diffraction
+ pan-powder: powder diffraction
+ pan-small-angle-scattering: small angle scattering
+ pan-spectroscopy: X-Rays and Neutron spectroscopy
+ pan-tomography: photons and neutrons (PAN) Blend tomography
+ pan-xas: EXAFS and XANES
+
+Package: pan-coherent-diffraction
+Section: metapackages
+Architecture: all
+Depends: ${misc:Depends},
+ pan-config (= ${source:Version}),
+ pan-tasks (= ${source:Version})
+Recommends: facet-analyser
+Suggests: bonsu,
+ hawk,
+ ptypy,
+ pynx,
+ python3-moviepy
+Description: coherent diffraction software
+ This metapackage will install X-ray photons-and-neutrons PAN Blend coherent
+ diffraction packages.
Package: pan-control-systems
Section: metapackages
@@ -78,29 +109,107 @@
Depends: ${misc:Depends},
pan-config (= ${source:Version}),
pan-tasks (= ${source:Version})
-Recommends: fityk,
+Recommends: admesh,
+ bitshuffle,
+ clpeak,
+ fityk,
gnuplot,
+ grads,
+ h5utils,
+ hdf-compass,
+ hdf5-tools,
imagej,
+ jupyterhub,
+ labplot,
+ libxrl-dev,
+ libxrl11,
libxy-bin,
+ looktxt,
+ lz4,
ngraph-gtk,
octave,
+ pandoc,
pymca,
+ python-agate-doc,
+ python-dask-doc,
+ python-ipywidgets-doc,
+ python-mpi4py-doc,
+ python-skbio-doc,
+ python-skimage-doc,
+ python-sklearn-doc,
+ python-tables-doc,
+ python3-agate,
+ python3-colorcet,
+ python3-colormap,
+ python3-cycler,
+ python3-dask,
+ python3-gmplot,
+ python3-graphviz,
+ python3-h5netcdf,
+ python3-h5py,
+ python3-h5sparse,
python3-hyperspy,
+ python3-ipyparallel,
+ python3-ipywidgets,
+ python3-joypy,
+ python3-leather,
+ python3-matplotlib,
+ python3-mpi4py,
+ python3-mpl-scatter-density,
+ python3-mplcursors,
+ python3-mplexporter,
+ python3-netcdf4,
+ python3-numpy-groupies,
+ python3-opencv,
+ python3-palettable,
+ python3-pandas,
+ python3-periodictable,
+ python3-procrunner,
+ python3-pweave,
+ python3-pyct,
+ python3-pytest-mpl,
+ python3-seaborn,
+ python3-skbio,
+ python3-skimage,
+ python3-sklearn,
+ python3-sklearn-pandas,
+ python3-tables,
+ python3-tifffile,
+ python3-traitlets,
+ python3-xarray,
+ python3-xraydb,
+ python3-zarr,
+ qemu-web-desktop,
scilab,
silx,
- spyder3,
+ texlive-science,
+ tifffile,
+ view3dscene,
vistrails,
- xmaxima
-Suggests: dawn,
+ vitables,
+ xmaxima,
+ xpython,
+ zstd
+Suggests: bcolz-doc,
+ dawn,
disp,
edna,
graphlab,
gumtree,
+ libjulia-openblas64,
mantid,
nexpy,
+ python3-bcolz,
+ python3-descartes,
+ python3-mpld3,
+ python3-mpltoolkits.basemap,
+ python3-pyvkfft,
+ python3-xelatex,
+ spyder3,
thredds
Description: Data reduction frameworks
- This metapackage will install frameworks dedicated to the data reduction
+ This metapackage will install X-ray photons-and-neutrons PAN frameworks
+ dedicated to the data reduction
Package: pan-data-reduction-frameworks-dev
Section: metapackages
@@ -114,9 +223,8 @@
Suggests: cdma,
comete
Description: PAN Debian data reduction frameworks dev
- This metapackage will install all PAN Blend packages. This is
- a temporary package until we sorted all packages into the right
- categories.
+ This metapackage will install X-ray photons-and-neutrons PAN frameworks
+ dedicated to data reduction development.
Package: pan-diffraction
Section: metapackages
@@ -125,39 +233,192 @@
pan-config (= ${source:Version}),
pan-tasks (= ${source:Version})
Recommends: binoculars,
+ binoculars-doc,
+ cif2hkl,
+ debichem-crystallography,
+ density-fitness,
+ dioptas,
+ fityk,
+ gcrystal,
+ ghkl,
+ gir1.2-hkl-5.0,
+ libccp4-data,
+ libccp4-dev,
+ libhkl-dev,
+ libhkl-doc,
+ libxy-bin,
+ libxy-dev,
+ objcryst-fox,
+ pyfai,
+ python-pyfai-doc,
+ python-silx-doc,
python-xrayutilities-doc,
+ python3-binoculars,
python3-denss,
- python3-xrayutilities
-Suggests: nebula
-Description: diffraction softwares suit
- This metapackage will install all diffraction softwares
+ python3-dials-data,
+ python3-pyfai,
+ python3-pyobjcryst,
+ python3-pyxrd,
+ python3-silx,
+ python3-xrayutilities,
+ silx
+Suggests: libobjcryst,
+ nebula,
+ pynx,
+ python3-moviepy
+Description: diffraction software suit
+ This metapackage will install all X-ray photons-and-neutrons PAN diffraction
+ software
-Package: pan-gid
+Package: pan-grazing-incidence
Section: metapackages
Architecture: all
Depends: ${misc:Depends},
pan-config (= ${source:Version}),
pan-tasks (= ${source:Version})
Recommends: binoculars,
+ bornagain,
+ bornagain-doc,
python-xrayutilities-doc,
+ python3-bornagain,
python3-denss,
+ python3-genx,
python3-xrayutilities
Suggests: fitgisaxs,
gsas,
- isgisaxs
-Description: Grazing incidence X-ray and neutron diffraction
- This metapackage will install all GID, GIXD, GIND, GISAS, GISAXS, GISANS software
+ isgisaxs,
+ python3-moviepy
+Description: Grazing incidence X-ray photon and neutron diffraction
+ This metapackage will install all GID, GIXD, GIND, GISAS, GISAXS, GISANS
+ software
-Package: pan-microscopy
+Package: pan-imaging
Section: metapackages
Architecture: all
Depends: ${misc:Depends},
pan-config (= ${source:Version}),
pan-tasks (= ${source:Version})
-Recommends: gwyddion
-Suggests: threeb
-Description: microscopy IR
- This metapackage will install all microscopy softwares
+Recommends: 3depict,
+ astro-frameworks,
+ astro-gdl,
+ astro-python3,
+ astropy-utils,
+ facet-analyser,
+ g3data,
+ giza-dev,
+ gmsh,
+ gnudatalanguage,
+ gnuplot,
+ gphoto2,
+ grace,
+ graphviz,
+ gri,
+ gwyddion,
+ imagej,
+ imview,
+ kst,
+ mantis-xray,
+ mayavi2,
+ med-imaging,
+ pdl,
+ python3-aplpy,
+ python3-astroml,
+ python3-astropy,
+ python3-cartopy,
+ python3-cpl,
+ python3-fitsio,
+ python3-gammapy,
+ python3-gdl,
+ python3-gnuplot,
+ python3-guiqwt,
+ python3-hyperspy,
+ python3-imexam,
+ python3-olefile,
+ python3-photutils,
+ python3-pyqtgraph,
+ python3-seaborn,
+ python3-specutils,
+ python3-willow,
+ rasmol,
+ relion,
+ relion-gui,
+ sextractor,
+ threeb,
+ threeb-imagej,
+ veusz
+Suggests: ifrit,
+ ovito,
+ plotdrop,
+ python3-astroml-addons,
+ python3-moviepy,
+ python3-wcsaxes,
+ qtiplot,
+ relion-cuda,
+ relion-gui-cuda
+Description: imaging software
+ This metapackage will install all X-ray photons-and-neutrons PAN imaging
+ software
+
+Package: pan-machine-learning
+Section: metapackages
+Architecture: all
+Depends: ${misc:Depends},
+ pan-config (= ${source:Version}),
+ pan-tasks (= ${source:Version})
+Recommends: libopencv-dnn-dev,
+ libtorch-test,
+ python3-brian,
+ python3-eagerpy,
+ python3-keras-applications,
+ python3-keras-preprocessing,
+ python3-mdp,
+ python3-onnx,
+ python3-pyclustering,
+ python3-skorch,
+ python3-torch
+Suggests: keras-doc,
+ libopencv-dnn4.5,
+ libtorch-thnn,
+ python-tpot-doc,
+ python3-keras,
+ python3-lasagne,
+ python3-onnxlibxnnpack-dev,
+ python3-torch-ignite,
+ python3-tpot
+Description: machine learning software
+ This metapackage will install all the machine learning software for
+ photons-and-neutrons PAN
+
+Package: pan-modelling
+Section: metapackages
+Architecture: all
+Depends: ${misc:Depends},
+ pan-config (= ${source:Version}),
+ pan-tasks (= ${source:Version})
+Recommends: debichem-analytical-biochemistry,
+ debichem-cheminformatics,
+ debichem-development,
+ debichem-input-generation-output-processing,
+ debichem-molecular-abinitio,
+ debichem-molecular-dynamics,
+ debichem-molecular-modelling,
+ debichem-periodic-abinitio,
+ debichem-semiempirical,
+ debichem-visualisation,
+ libncrystal-bin,
+ mcpl,
+ python3-phonopy,
+ python3-xrt
+Suggests: mcstas,
+ mcstas-comps,
+ mcstas-tools-python-mcgui,
+ mcxtrace,
+ mcxtrace-comps,
+ mcxtrace-tools-python-mcgui,
+ mumax3
+Description: modeling software
+ This metapackage will install all modelling software for X-ray
+ photons-and-neutrons PAN
Package: pan-mx
Section: metapackages
@@ -175,7 +436,10 @@
openbabel,
povray,
pymol,
- python,
+ python3-cctbx,
+ python3-dials-data,
+ python3-extra-data,
+ python3-mrcfile,
rasmol,
raster3d,
theseus
@@ -256,9 +520,9 @@
pirate,
plotmtv,
pointless,
- powder,
promotif,
pxpy,
+ python,
raddose,
refmac,
replace,
@@ -296,7 +560,8 @@
xrec,
xtalview
Description: Macro Molecular diffraction
- This metapackage will install all MX diffraction softwares.
+ This metapackage will install all MX diffraction software for X-ray
+ photons-and-neutrons PAN.
Package: pan-powder
Section: metapackages
@@ -304,10 +569,12 @@
Depends: ${misc:Depends},
pan-config (= ${source:Version}),
pan-tasks (= ${source:Version})
-Recommends: fityk,
+Recommends: dioptas,
+ fityk,
libxy-bin,
objcryst-fox,
- pyfai
+ pyfai,
+ python3-pyxrd
Suggests: fullprof,
jpowder,
pygsas,
@@ -315,7 +582,8 @@
spd,
xrdua
Description: powder diffraction
- This metapackage will install all powder diffraction softwares.
+ This metapackage will install all X-ray photons-and-neutrons PAN powder
+ diffraction software.
Package: pan-small-angle-scattering
Section: metapackages
@@ -323,18 +591,26 @@
Depends: ${misc:Depends},
pan-config (= ${source:Version}),
pan-tasks (= ${source:Version})
-Recommends: fityk,
+Recommends: dioptas,
+ fityk,
pyfai,
+ python-sasmodels-doc,
+ python3-bioxtasraw,
python3-denss,
- sasview
+ python3-freesas,
+ python3-sasmodels,
+ python3-sasview,
+ sasmodels-private-libs,
+ sasview,
+ sasview-doc
Suggests: bsl,
diffraction-ring-profiler,
sastbx,
saxsview,
spd
Description: small angle scattering
- This metapackage will install all PAN Blend small angle scattering
- packages.
+ This metapackage will install all X-ray photons-and-neutrons PAN Blend
+ small angle scattering packages.
Package: pan-spectroscopy
Section: metapackages
@@ -342,11 +618,23 @@
Depends: ${misc:Depends},
pan-config (= ${source:Version}),
pan-tasks (= ${source:Version})
-Recommends: python3-arpys,
- python3-igor
-Suggests: arpys
+Recommends: etsf-io,
+ mantis-xray,
+ pymca,
+ python3-arpys,
+ python3-igor,
+ python3-phonopy,
+ python3-pyimagetool,
+ python3-pymatgen,
+ python3-spectral,
+ spview
+Suggests: arpys,
+ dmrgpp,
+ navarp,
+ python3-xrstools
Description: X-Rays and Neutron spectroscopy
- This metapackage will install all spectroscopy packages.
+ This metapackage will install all X-ray photons-and-neutrons PAN spectroscopy
+ packages (XPS, ARPES, IXS, ...).
Package: pan-tomography
Section: metapackages
@@ -354,21 +642,42 @@
Depends: ${misc:Depends},
pan-config (= ${source:Version}),
pan-tasks (= ${source:Version})
-Recommends: libufo-bin,
+Recommends: ctsim,
+ ctsim-doc,
+ ctsim-help,
+ dioptas,
+ facet-analyser,
+ geomview,
+ gir1.2-ufo-1.0,
mayavi2,
+ meshio-tools,
+ meshlab,
paraview,
+ paraview-dev,
+ paraview-doc,
+ plastimatch,
+ python3-paraview,
python3-skimage,
- ufo-filters
-Suggests: freeart,
- imagej-pluggins-tomo,
+ rheolef,
+ ufo-core-doc,
+ ufo-filters,
+ ufo-filters-doc
+Suggests: imagej-pluggins-tomo,
octave-astra-toolbox,
python3-astra-toolbox,
+ python3-freeart,
python3-pyhst2-cuda,
+ python3-tomogui,
+ python3-tomopy,
rabbitct,
+ tomodata,
tomographie-preexperiment-data-collector,
+ tomogui,
+ tomoj,
tomopy
-Description: PAN Blend tomography
- This metapackage will install all PAN Blend tomography packages.
+Description: Photons and Neutrons (PAN) Blend tomography
+ This metapackage will install all X-ray photons-and-neutrons PAN Blend
+ tomography packages.
Package: pan-xas
Section: metapackages
@@ -378,8 +687,13 @@
pan-tasks (= ${source:Version}),
pymca,
quantum-espresso
-Suggests: prestopronto,
+Recommends: ifeffit,
+ python3-xraylarch
+Suggests: feff85,
+ horae,
+ prestopronto,
xraylarch
Description: EXAFS and XANES
- This metapackage will install all EXAFS and XANES packages.
+ This metapackage will install all X-ray photons-and-neutrons PAN EXAFS and
+ XANES absorption spectroscopy packages.
diff -Nru debian-pan-0.3/debian/control.stub debian-pan-0.4/debian/control.stub
--- debian-pan-0.3/debian/control.stub 2021-02-28 14:43:03.000000000 +0100
+++ debian-pan-0.4/debian/control.stub 2023-03-06 12:01:06.000000000 +0100
@@ -1,11 +1,11 @@
Source: debian-pan
Section: science
Priority: optional
-Maintainer: Debian Science Team <debian-science-maintainers at lists.alioth.debian.org>
+Maintainer: Debian Pan Team <debian-pan-maintainers at alioth-lists.debian.net>
Uploaders: Picca Fr?d?ric-Emmanuel <picca at debian.org>
Build-Depends: debhelper-compat (= 12)
Build-Depends-Indep: blends-dev (>= 0.6.15)
-Standards-Version: 4.5.0
+Standards-Version: 4.6.2
Homepage: https://wiki.debian.org/DebianPAN
Vcs-Browser: https://salsa.debian.org/blends-team/pan
Vcs-Git: https://salsa.debian.org/blends-team/pan.git
diff -Nru debian-pan-0.3/debian/copyright debian-pan-0.4/debian/copyright
--- debian-pan-0.3/debian/copyright 2021-02-28 14:43:03.000000000 +0100
+++ debian-pan-0.4/debian/copyright 2023-03-06 12:01:06.000000000 +0100
@@ -1,24 +1,11 @@
-X-Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat
-X-Debianized-By: Frederic Daniel Luc Lehobey <Frederic at Lehobey.net>,
- Andreas Tille <tille at debian.org>
-X-Debinized-Date: Mon, 23 Jul 2007 09:18:16 +0200.
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: Debian Pan
+Upstream-Contact: Debian Pan Team <debian-pan-maintainers at alioth-lists.debian.net>
+Source: https://salsa.debian.org/blends-team/pan
Files: *
-Copyright: ? 2007-2009 Frederic Daniel Luc Lehobey <Frederic at Lehobey.net>,
+Copyright: ? 2013-2021 Picca Fr?d?ric-Emmanuel <picca at debian.org>
Andreas Tille <tille at debian.org> and others
-License: GPL-2+
- This program is free software; you can redistribute it and/or modify
- it under the terms of the GNU General Public License as published by
- the Free Software Foundation; either version 2 of the License, or
- (at your option) any later version.
- .
- This program is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- GNU General Public License for more details.
- .
- You should have received a copy of the GNU General Public License along
- with this program; if not, write to the Free Software Foundation, Inc.,
- 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
-Comment: On Debian systems, the complete text of the GNU General Public
- License can be found in `/usr/share/common-licenses/GPL-2'.
+License: GPL-3
+ On Debian systems, the complete text of the GNU General Public
+ License can be found in `/usr/share/common-licenses/GPL-3'.
diff -Nru debian-pan-0.3/debian-pan-tasks.desc debian-pan-0.4/debian-pan-tasks.desc
--- debian-pan-0.3/debian-pan-tasks.desc 2021-02-28 14:43:03.000000000 +0100
+++ debian-pan-0.4/debian-pan-tasks.desc 2023-03-06 12:01:06.000000000 +0100
@@ -4,6 +4,15 @@
Description: Debian Pan Pure Blend
.
+Task: pan-coherent-diffraction
+Parent: debian-pan
+Section: debian-pan
+Description: coherent diffraction software
+ This metapackage will install X-ray photons-and-neutrons PAN Blend coherent
+ diffraction packages.
+Key:
+ pan-coherent-diffraction
+
Task: pan-control-systems
Parent: debian-pan
Section: debian-pan
@@ -29,7 +38,8 @@
Parent: debian-pan
Section: debian-pan
Description: Data reduction frameworks
- This metapackage will install frameworks dedicated to the data reduction
+ This metapackage will install X-ray photons-and-neutrons PAN frameworks
+ dedicated to the data reduction
Key:
pan-data-reduction-frameworks
@@ -37,41 +47,62 @@
Parent: debian-pan
Section: debian-pan
Description: PAN Debian data reduction frameworks dev
- This metapackage will install all PAN Blend packages. This is
- a temporary package until we sorted all packages into the right
- categories.
+ This metapackage will install X-ray photons-and-neutrons PAN frameworks
+ dedicated to data reduction development.
Key:
pan-data-reduction-frameworks-dev
Task: pan-diffraction
Parent: debian-pan
Section: debian-pan
-Description: diffraction softwares suit
- This metapackage will install all diffraction softwares
+Description: diffraction software suit
+ This metapackage will install all X-ray photons-and-neutrons PAN diffraction
+ software
Key:
pan-diffraction
-Task: pan-gid
+Task: pan-grazing-incidence
+Parent: debian-pan
+Section: debian-pan
+Description: Grazing incidence X-ray photon and neutron diffraction
+ This metapackage will install all GID, GIXD, GIND, GISAS, GISAXS, GISANS
+ software
+Key:
+ pan-grazing-incidence
+
+Task: pan-imaging
+Parent: debian-pan
+Section: debian-pan
+Description: imaging software
+ This metapackage will install all X-ray photons-and-neutrons PAN imaging
+ software
+Key:
+ pan-imaging
+
+Task: pan-machine-learning
Parent: debian-pan
Section: debian-pan
-Description: Grazing incidence X-ray and neutron diffraction
- This metapackage will install all GID, GIXD, GIND, GISAS, GISAXS, GISANS software
+Description: machine learning software
+ This metapackage will install all the machine learning software for
+ photons-and-neutrons PAN
Key:
- pan-gid
+ pan-machine-learning
-Task: pan-microscopy
+Task: pan-modelling
Parent: debian-pan
Section: debian-pan
-Description: microscopy IR
- This metapackage will install all microscopy softwares
+Description: modeling software
+ This metapackage will install all modelling software for X-ray
+ photons-and-neutrons PAN
Key:
- pan-microscopy
+ pan-modelling
Task: pan-mx
Parent: debian-pan
Section: debian-pan
Description: Macro Molecular diffraction
- This metapackage will install all MX diffraction softwares.
+ This metapackage will install all MX diffraction software for X-ray
+ photons-and-neutrons PAN.
Key:
pan-mx
@@ -79,7 +110,8 @@
Parent: debian-pan
Section: debian-pan
Description: powder diffraction
- This metapackage will install all powder diffraction softwares.
+ This metapackage will install all X-ray photons-and-neutrons PAN powder
+ diffraction software.
Key:
pan-powder
@@ -87,8 +119,8 @@
Parent: debian-pan
Section: debian-pan
Description: small angle scattering
- This metapackage will install all PAN Blend small angle scattering
- packages.
+ This metapackage will install all X-ray photons-and-neutrons PAN Blend
+ small angle scattering packages.
Key:
pan-small-angle-scattering
@@ -96,15 +128,17 @@
Parent: debian-pan
Section: debian-pan
Description: X-Rays and Neutron spectroscopy
- This metapackage will install all spectroscopy packages.
+ This metapackage will install all X-ray photons-and-neutrons PAN spectroscopy
+ packages (XPS, ARPES, IXS, ...).
Key:
pan-spectroscopy
Task: pan-tomography
Parent: debian-pan
Section: debian-pan
-Description: PAN Blend tomography
- This metapackage will install all PAN Blend tomography packages.
+Description: Photons and Neutrons (PAN) Blend tomography
+ This metapackage will install all X-ray photons-and-neutrons PAN Blend
+ tomography packages.
Key:
pan-tomography
@@ -112,7 +146,8 @@
Parent: debian-pan
Section: debian-pan
Description: EXAFS and XANES
- This metapackage will install all EXAFS and XANES packages.
+ This metapackage will install all X-ray photons-and-neutrons PAN EXAFS and
+ XANES absorption spectroscopy packages.
Key:
pan-xas
diff -Nru debian-pan-0.3/dependency_data/debian-pan_0.3.json debian-pan-0.4/dependency_data/debian-pan_0.3.json
--- debian-pan-0.3/dependency_data/debian-pan_0.3.json 1970-01-01 01:00:00.000000000 +0100
+++ debian-pan-0.4/dependency_data/debian-pan_0.3.json 2023-03-06 12:01:06.000000000 +0100
@@ -0,0 +1 @@
+{"control-systems-dev": {"depends": [], "suggests": ["libuca", "lima"], "recommends": ["libhkl-dev", "libtango-dev", "python3-tango", "python3-sardana", "python3-taurus", "python3-taurus-pyqtgraph"], "ignore": [], "avoid": []}, "mx-dev": {"depends": [], "suggests": ["libccif-dev", "libccp4-dev", "libclipper-dev", "libmmdb-dev", "libssm-dev"], "recommends": [], "ignore": [], "avoid": []}, "powder": {"depends": [], "suggests": ["fullprof", "jpowder", "xrdua", "pygsas", "pyxrd"], "recommends": ["fityk", "libxy-bin", "objcryst-fox", "pyfai", "spd"], "ignore": [], "avoid": []}, "data-reduction-frameworks-dev": {"depends": ["pan-data-reduction-frameworks", "libmgl-dev", "libnexus-dev"], "suggests": ["cdma", "comete"], "recommends": [], "ignore": [], "avoid": []}, "data-reduction-frameworks": {"depends": [], "suggests": ["dawn", "disp", "edna", "graphlab", "gumtree", "mantid", "thredds", "nexpy"], "recommends": ["fityk", "gnuplot", "imagej", "libxy-bin", "ngraph-gtk", "octave", "pymca", "python3-hyperspy", "scilab", "silx", "spyder3", "vistrails", "xmaxima"], "ignore": [], "avoid": []}, "microscopy": {"depends": [], "suggests": ["threeb"], "recommends": ["gwyddion"], "ignore": [], "avoid": []}, "spectroscopy": {"depends": [], "suggests": ["arpys"], "recommends": ["python3-arpys", "python3-igor"], "ignore": [], "avoid": []}, "xas": {"depends": ["pymca", "quantum-espresso"], "suggests": ["xraylarch", "prestopronto"], "recommends": [], "ignore": [], "avoid": []}, "coherent-diffraction": {"depends": [], "suggests": ["bonsu", "hawk", "pynx", "ptypy"], "recommends": [], "ignore": [], "avoid": []}, "mx": {"depends": [], "suggests": ["coot", "edna", "nmoldyn", "phenix", "3dna", "adxv", "aimless", "albula", "aplx", "atsas", "autoproc", "balbes", "best", "bioxhit", "biox-xds", "bobscript", "bp3-old", "c3d", "cath", "ccp4", "cctbx", "chart", "chimera", "chooch", "cn2coot", "cns", "crank", "crystfel", "das", "dna", "domain-finder", "dps2ar", "dviewer", "dyndom3d", "edna", "elves", "epmr", "escet", "evrouter", "fit2d", "fobscom", "gramm", "grasp", "harker", "hbplus", "hca", "hkl2map", "hyss", "imosflm", "induced-rad-dam", "ipymol", "ispyb-client", "labelit", "lam", "laue", "liged", "ligplot", "ligplus", "lscale", "maid", "main", "mar345", "marutils", "mercury", "mlfsom", "molscriptmolscript-2.1.2", "mosflm", "msi", "nuccyl", "nucplot", "onoono80ono90", "phaser", "phases", "phenix", "pirate", "plotmtv", "pointless", "powder", "promotif", "pxpy", "raddose", "refmac", "replace", "ribbons", "ringer", "rmerge", "rosetta", "rtools", "saxs", "shakerr", "sharp", "shelx", "sir", "sir2002", "snb2.2", "snow", "solvesolve-2.08", "stac-stac2", "strategy", "surfnet", "tcltkblt", "testcase", "textal", "tools", "tops", "usf", "viewhkl", "wink", "workflow-ds", "workflow-executor", "xds", "xdsme", "xiaxia2", "xprep", "xrec", "xtalview", "dials", "gemmi"], "recommends": ["apbs", "autodock", "openbabel", "clustalw", "gnuplot", "imagej", "jmol", "libmmdb2-0", "povray", "pymol", "python", "rasmol", "raster3d", "theseus"], "ignore": [], "avoid": []}, "diffraction": {"depends": [], "suggests": ["nebula"], "recommends": ["binoculars", "python3-denss", "python3-xrayutilities", "python-xrayutilities-doc"], "ignore": [], "avoid": []}, "small-angle-scattering": {"depends": [], "suggests": ["bsl", "diffraction-ring-profiler", "sastbx", "saxsview"], "recommends": ["python3-denss", "fityk", "pyfai", "sasview", "spd"], "ignore": [], "avoid": []}, "laue": {"depends": [], "suggests": ["esmeralda"], "recommends": [], "ignore": [], "avoid": []}, "control-systems": {"depends": [], "suggests": ["micromanager", "opengda", "tomographie-preexperiment-data-collector"], "recommends": ["ghkl", "python3-tango", "python3-taurus", "python3-taurus-pyqtgraph", "python3-sardana", "tango-db", "tango-starter", "tango-accesscontrol"], "ignore": [], "avoid": []}, "gid": {"depends": [], "suggests": ["gsas", "isgisaxs", "fitgisaxs"], "recommends": ["binoculars", "python3-denss", "python3-xrayutilities", "python-xrayutilities-doc"], "ignore": [], "avoid": []}, "tomography": {"depends": [], "suggests": ["octave-astra-toolbox", "python3-astra-toolbox", "python3-pyhst2-cuda", "freeart", "imagej-pluggins-tomo", "rabbitct", "tomographie-preexperiment-data-collector", "tomopy"], "recommends": ["libufo-bin", "mayavi2", "paraview", "python3-skimage", "ufo-filters"], "ignore": [], "avoid": []}}
\ Kein Zeilenumbruch am Dateiende.
diff -Nru debian-pan-0.3/dependency_data/debian-pan_0.4.json debian-pan-0.4/dependency_data/debian-pan_0.4.json
--- debian-pan-0.3/dependency_data/debian-pan_0.4.json 1970-01-01 01:00:00.000000000 +0100
+++ debian-pan-0.4/dependency_data/debian-pan_0.4.json 2023-03-06 12:01:06.000000000 +0100
@@ -0,0 +1 @@
+{"control-systems-dev": {"depends": [], "suggests": ["libuca", "lima"], "recommends": ["libhkl-dev", "libtango-dev", "python3-tango", "python3-sardana", "python3-taurus", "python3-taurus-pyqtgraph"], "ignore": [], "avoid": []}, "mx-dev": {"depends": [], "suggests": ["libccif-dev", "libccp4-dev", "libclipper-dev", "libmmdb-dev", "libssm-dev"], "recommends": [], "ignore": [], "avoid": []}, "powder": {"depends": [], "suggests": ["fullprof", "jpowder", "xrdua", "pygsas", "pyxrd"], "recommends": ["dioptas", "fityk", "libxy-bin", "objcryst-fox", "pyfai", "python3-pyxrd", "spd"], "ignore": [], "avoid": []}, "data-reduction-frameworks-dev": {"depends": ["pan-data-reduction-frameworks", "libmgl-dev", "libnexus-dev"], "suggests": ["cdma", "comete"], "recommends": [], "ignore": [], "avoid": []}, "data-reduction-frameworks": {"depends": [], "suggests": ["dawn", "disp", "edna", "graphlab", "gumtree", "mantid", "thredds", "nexpy"], "recommends": ["admesh", "bcolz-doc", "clpeak", "h5utils", "hdf5-tools", "hdf-compass", "bitshuffle", "fityk", "gnuplot", "grads", "imagej", "labplot", "libxrl11", "libxrl-dev", "libxy-bin", "looktxt", "lz4", "ngraph-gtk", "octave", "pandoc", "pymca", "python3-agate", "python-agate-doc", "python3-bcolz", "python3-colorcet", "python3-cycler", "python3-mpltoolkits.basemap", "python3-dask", "python-dask-doc", "python3-descartes", "python3-gmplot", "python3-graphviz", "python3-h5netcdf", "python3-h5py", "python3-h5sparse", "python3-hyperspy", "python3-ipyparallel", "python3-ipywidgets", "python-ipywidgets-doc", "python3-joypy", "python3-leather", "python3-matplotlib", "python3-mpi4py", "python-mpi4py-doc", "python3-mplcursors", "python3-mpld3", "python3-mplexporter", "python3-colormap", "python3-mpl-scatter-density", "python3-netcdf4", "python3-numpy-groupies", "python3-opencv", "python3-palettable", "python3-pandas", "python3-periodictable", "python3-procrunner", "python3-pyct", "python3-pweave", "python3-pytest-mpl", "python3-pytest-mpl", "python3-seaborn", "python3-skbio", "python-skbio-doc", "python3-skimage", "python-skimage-doc", "python3-sklearn", "python-sklearn-doc", "python3-sklearn-pandas", "python3-tables", "python-tables-doc", "python3-tifffile", "python3-traitlets", "python3-pyvkfft", "python3-xarray", "python3-xelatex", "python3-xraydb", "python3-zarr", "qemu-web-desktop", "scilab", "silx", "spyder3", "texlive-science", "tifffile", "view3dscene", "vistrails", "xmaxima", "vitables", "zstd", "xpython", "libjulia-openblas64"], "ignore": [], "avoid": []}, "spectroscopy": {"depends": [], "suggests": ["arpys"], "recommends": ["dmrgpp", "etsf-io", "mantis-xray", "navarp", "pymca", "python3-arpys", "python3-igor", "python3-phonopy", "python3-pyimagetool", "python3-pymatgen", "python3-spectral", "python3-xrstools", "spview"], "ignore": [], "avoid": []}, "xas": {"depends": ["pymca", "quantum-espresso"], "suggests": ["xraylarch", "prestopronto"], "recommends": ["feff85", "ifeffit", "horae", "python3-xraylarch"], "ignore": [], "avoid": []}, "coherent-diffraction": {"depends": [], "suggests": ["bonsu", "hawk", "pynx", "ptypy"], "recommends": ["facet-analyser", "python3-moviepy"], "ignore": [], "avoid": []}, "mx": {"depends": [], "suggests": ["coot", "edna", "nmoldyn", "phenix", "3dna", "adxv", "aimless", "albula", "aplx", "atsas", "autoproc", "balbes", "best", "bioxhit", "biox-xds", "bobscript", "bp3-old", "c3d", "cath", "ccp4", "cctbx", "chart", "chimera", "chooch", "cn2coot", "cns", "crank", "crystfel", "das", "dna", "domain-finder", "dps2ar", "dviewer", "dyndom3d", "edna", "elves", "epmr", "escet", "evrouter", "fit2d", "fobscom", "gramm", "grasp", "harker", "hbplus", "hca", "hkl2map", "hyss", "imosflm", "induced-rad-dam", "ipymol", "ispyb-client", "labelit", "lam", "laue", "liged", "ligplot", "ligplus", "lscale", "maid", "main", "mar345", "marutils", "mercury", "mlfsom", "molscriptmolscript-2.1.2", "mosflm", "msi", "nuccyl", "nucplot", "onoono80ono90", "phaser", "phases", "phenix", "pirate", "plotmtv", "pointless", "promotif", "pxpy", "raddose", "refmac", "replace", "ribbons", "ringer", "rmerge", "rosetta", "rtools", "saxs", "shakerr", "sharp", "shelx", "sir", "sir2002", "snb2.2", "snow", "solvesolve-2.08", "stac-stac2", "strategy", "surfnet", "tcltkblt", "testcase", "textal", "tools", "tops", "usf", "viewhkl", "wink", "workflow-ds", "workflow-executor", "xds", "xdsme", "xiaxia2", "xprep", "xrec", "xtalview", "dials", "gemmi"], "recommends": ["python3-mrcfile", "python3-cctbx", "python3-dials-data", "python3-extra-data", "apbs", "autodock", "openbabel", "clustalw", "gnuplot", "imagej", "jmol", "libmmdb2-0", "povray", "pymol", "python", "rasmol", "raster3d", "theseus"], "ignore": [], "avoid": []}, "imaging": {"depends": [], "suggests": [], "recommends": ["3depict", "astro-frameworks", "astro-gdl", "astro-python3", "astropy-utils", "facet-analyser", "g3data", "giza-dev", "gmsh", "gnudatalanguage", "gnuplot", "gphoto2", "grace", "graphviz", "gri", "gwyddion", "ifrit", "imagej", "imview", "kst", "mantis-xray", "mayavi2", "med-imaging", "ovito", "pdl", "plotdrop", "python3-aplpy", "python3-astroml", "python3-astroml-addons", "python3-astropy", "python3-fitsio", "python3-cartopy", "python3-cpl", "python3-gammapy", "python3-gdl", "python3-gnuplot", "python3-guiqwt", "python3-hyperspy", "python3-imexam", "python3-moviepy", "python3-olefile", "python3-photutils", "python3-pyqtgraph", "python3-seaborn", "python3-specutils", "python3-wcsaxes", "python3-willow", "qtiplot", "rasmol", "relion", "relion-cuda", "relion-gui", "relion-gui-cuda", "sextractor", "threeb", "threeb-imagej", "veusz"], "ignore": [], "avoid": []}, "diffraction": {"depends": [], "suggests": ["nebula", "pynx"], "recommends": ["binoculars", "binoculars-doc", "python3-binoculars", "cif2hkl", "debichem-crystallography", "density-fitness", "dioptas", "fityk", "gcrystal", "ghkl", "gir1.2-hkl-5.0", "libhkl-dev", "libhkl-doc", "libccp4-data", "libccp4-dev", "libxy-bin", "libxy-dev", "objcryst-fox", "pyfai", "python3-pyfai", "python-pyfai-doc", "python3-denss", "python3-dials-data", "python3-moviepy", "python3-xrayutilities", "python-xrayutilities-doc", "python3-pyxrd", "python3-silx", "python-silx-doc", "silx", "dioptas", "libobjcryst", "python3-pyobjcryst"], "ignore": [], "avoid": []}, "small-angle-scattering": {"depends": [], "suggests": ["bsl", "diffraction-ring-profiler", "sastbx", "saxsview"], "recommends": ["dioptas", "fityk", "pyfai", "python3-bioxtasraw", "python3-denss", "python3-freesas", "python3-sasmodels", "python-sasmodels-doc", "python3-sasview", "sasview", "sasview-doc", "sasmodels-private-libs", "spd"], "ignore": [], "avoid": []}, "laue": {"depends": [], "suggests": ["esmeralda"], "recommends": [], "ignore": [], "avoid": []}, "control-systems": {"depends": [], "suggests": ["micromanager", "opengda", "tomographie-preexperiment-data-collector"], "recommends": ["ghkl", "python3-tango", "python3-taurus", "python3-taurus-pyqtgraph", "python3-sardana", "tango-db", "tango-starter", "tango-accesscontrol"], "ignore": [], "avoid": []}, "modelling": {"depends": [], "suggests": [], "recommends": ["debichem-analytical-biochemistry", "debichem-cheminformatics", "debichem-development", "debichem-input-generation-output-processing", "debichem-molecular-abinitio", "debichem-molecular-dynamics", "debichem-molecular-modelling", "debichem-periodic-abinitio", "debichem-semiempirical", "debichem-visualisation", "python3-phonopy", "mcstas-tools-python-mcgui", "mcpl", "mcstas", "mcstas-comps", "libncrystal-bin", "mcxtrace-tools-python-mcgui", "mcpl", "mcxtrace", "mcxtrace-comps", "libncrystal-bin", "mumax3", "python3-xrt"], "ignore": [], "avoid": []}, "grazing-incidence": {"depends": [], "suggests": ["gsas", "isgisaxs", "fitgisaxs"], "recommends": ["binoculars", "bornagain", "bornagain-doc", "python3-bornagain", "python3-denss", "python3-genx", "python3-xrayutilities", "python-xrayutilities-doc", "python3-moviepy"], "ignore": [], "avoid": []}, "machine-learning": {"depends": [], "suggests": [], "recommends": ["keras-doc", "python3-keras", "python3-keras-applications", "python3-keras-preprocessing", "libopencv-dnn4.5", "libopencv-dnn-dev", "libtorch-test", "libtorch-thnn", "python3-brian", "python3-eagerpy", "python3-lasagne", "python3-mdp", "python3-onnx", "python3-onnxlibxnnpack-dev", "python3-pyclustering", "python3-skorch", "python3-torch", "python3-torch-ignite", "python3-tpot", "python-tpot-doc"], "ignore": [], "avoid": []}, "tomography": {"depends": [], "suggests": ["imagej-pluggins-tomo", "rabbitct", "tomographie-preexperiment-data-collector", "tomodata", "tomogui", "tomoj"], "recommends": ["ctsim", "ctsim-doc", "ctsim-help", "facet-analyser", "geomview", "gir1.2-ufo-1.0", "ufo-core-doc", "mayavi2", "meshio-tools", "meshlab", "octave-astra-toolbox", "python3-astra-toolbox", "paraview", "paraview-dev", "paraview-doc", "plastimatch", "python3-freeart", "python3-pyhst2-cuda", "python3-paraview", "python3-skimage", "python3-tomogui", "python3-tomopy", "rheolef", "ufo-filters", "ufo-filters-doc", "tomopy", "dioptas"], "ignore": [], "avoid": []}}
\ Kein Zeilenumbruch am Dateiende.
diff -Nru debian-pan-0.3/tasks/coherent-diffraction debian-pan-0.4/tasks/coherent-diffraction
--- debian-pan-0.3/tasks/coherent-diffraction 2021-02-28 14:43:03.000000000 +0100
+++ debian-pan-0.4/tasks/coherent-diffraction 2023-03-06 12:01:06.000000000 +0100
@@ -1,9 +1,14 @@
Format: https://blends.debian.org/blends/1.1
Task: coherent-diffraction
-Description: coherent diffraction softwares
- This metapackage will install PAN Blend coherent diffraction packages.
+Description: coherent diffraction software
+ This metapackage will install X-ray photons-and-neutrons PAN Blend coherent
+ diffraction packages.
Comment: Improve the Description
+Recommends: facet-analyser
+
+Recommends: python3-moviepy
+
Suggests: bonsu
Homepage: http://code.google.com/p/bonsu/
License: GPL3+
diff -Nru debian-pan-0.3/tasks/data-reduction-frameworks debian-pan-0.4/tasks/data-reduction-frameworks
--- debian-pan-0.3/tasks/data-reduction-frameworks 2021-02-28 14:43:03.000000000 +0100
+++ debian-pan-0.4/tasks/data-reduction-frameworks 2023-03-06 12:01:06.000000000 +0100
@@ -1,35 +1,216 @@
Format: https://blends.debian.org/blends/1.1
Task: data-reduction-frameworks
Description: Data reduction frameworks
- This metapackage will install frameworks dedicated to the data reduction
+ This metapackage will install X-ray photons-and-neutrons PAN frameworks
+ dedicated to the data reduction
Comment: improve the description
+Recommends: admesh
+
+Recommends: bcolz-doc
+
+Recommends: clpeak
+
+Recommends: h5utils
+
+Recommends: hdf5-tools
+
+Recommends: hdf-compass
+
+Recommends: bitshuffle
+
Recommends: fityk
Recommends: gnuplot
+Recommends: grads
+
Recommends: imagej
+Recommends: labplot
+
+Recommends: libxrl11, libxrl-dev
+
Recommends: libxy-bin
+Recommends: looktxt
+
+Recommends: lz4
+
Recommends: ngraph-gtk
Recommends: octave
+Recommends: pandoc
+
Recommends: pymca
+Recommends: python3-agate, python-agate-doc
+
+Recommends: python3-bcolz
+
+Recommends: python3-colorcet
+
+Recommends: python3-cycler, python3-mpltoolkits.basemap
+
+Recommends: python3-dask, python-dask-doc
+
+Recommends: python3-descartes
+
+Recommends: python3-gmplot
+
+Recommends: python3-graphviz
+
+Recommends: python3-h5netcdf
+
+Recommends: python3-h5py
+
+Recommends: python3-h5sparse
+
Recommends: python3-hyperspy
+Recommends: python3-ipyparallel
+
+Recommends: python3-ipywidgets, python-ipywidgets-doc
+
+Recommends: python3-joypy
+
+Recommends: python3-leather
+
+Recommends: python3-matplotlib
+
+Recommends: python3-mpi4py, python-mpi4py-doc
+
+Recommends: python3-mplcursors
+
+Recommends: python3-mpld3
+
+Recommends: python3-mplexporter, python3-colormap
+
+Recommends: python3-mpl-scatter-density
+
+Recommends: python3-netcdf4
+
+Recommends: python3-numpy-groupies
+
+Recommends: python3-opencv
+
+Recommends: python3-palettable
+
+Recommends: python3-pandas
+
+Recommends: python3-periodictable
+
+Recommends: python3-procrunner
+
+Recommends: python3-pyct
+
+Recommends: python3-pweave
+
+Recommends: python3-pytest-mpl
+
+Recommends: python3-pytest-mpl
+
+Recommends: python3-seaborn
+
+Recommends: python3-skbio, python-skbio-doc
+
+Recommends: python3-skimage, python-skimage-doc
+
+Recommends: python3-sklearn, python-sklearn-doc
+
+Recommends: python3-sklearn-pandas
+
+Recommends: python3-tables, python-tables-doc
+
+Recommends: python3-tifffile
+
+Recommends: python3-traitlets
+
+Recommends: python3-pyvkfft
+
+Recommends: python3-xarray
+
+Recommends: python3-xelatex
+
+Recommends: python3-xraydb
+
+Recommends: python3-zarr
+
+Recommends: qemu-web-desktop
+
Recommends: scilab
Recommends: silx
Recommends: spyder3
+Recommends: texlive-science
+
+Recommends: tifffile
+
+Recommends: view3dscene
+
Recommends: vistrails
Recommends: xmaxima
+Recommends: vitables
+
+Recommends: zstd
+
+
+
+# Jupiter
+
+Recommends: jupyterhub
+
+Recommends: jupyter
+Recommends: jupyter-client
+Recommends: jupyter-console
+Recommends: jupyter-nbconvert
+Recommends: jupyter-nbextension-jupyter-js-widgets
+Recommends: jupyter-nbformat
+Recommends: jupyter-notebook
+Recommends: jupyter-qtconsole
+Recommends: jupyter-server
+Recommends: libxeus-python0
+Recommends: python3-ipykernel
+Recommends: python3-jupyter-client
+Recommends: python3-jupyter-console
+Recommends: python3-jupyterlab-pygments
+Recommends: python3-jupyterlab-server
+Recommends: python3-jupyter-server
+Recommends: python3-jupyter-sphinx-theme
+Recommends: python3-metakernel
+Recommends: python3-nbclient
+Recommends: python3-nbconvert
+Recommends: python3-nbformat
+Recommends: python3-nbsphinx
+Recommends: python3-notebook
+Recommends: python3-octave-kernel
+Recommends: python3-qtconsole
+Recommends: python3-spyder-kernels
+Recommends: python3-widgetsnbextension
+Recommends: python-jupyter-console-doc
+Recommends: python-nbclient-doc
+Recommends: python-nbformat-doc
+Recommends: python-notebook-doc
+Recommends: r-cran-irdisplay
+Recommends: r-cran-irkernel
+Recommends: xpython
+
+
+# R/Julia/Octave
+
+Recommends: octave
+Recommends: octave-*
+Recommends: r-*
+Recommends: julia-*
+Recommends: libjulia-openblas64
+
+
+
Suggests: dawn
Homepage: http://www.dawb.org/
License: ?
diff -Nru debian-pan-0.3/tasks/data-reduction-frameworks-dev debian-pan-0.4/tasks/data-reduction-frameworks-dev
--- debian-pan-0.3/tasks/data-reduction-frameworks-dev 2021-02-28 14:43:03.000000000 +0100
+++ debian-pan-0.4/tasks/data-reduction-frameworks-dev 2023-03-06 12:01:06.000000000 +0100
@@ -1,9 +1,8 @@
Format: https://blends.debian.org/blends/1.1
Task: data-reduction-frameworks-dev
Description: PAN Debian data reduction frameworks dev
- This metapackage will install all PAN Blend packages. This is
- a temporary package until we sorted all packages into the right
- categories.
+ This metapackage will install X-ray photons-and-neutrons PAN frameworks
+ dedicated to data reduction development.
comment: Improve the description
Depends: pan-data-reduction-frameworks
diff -Nru debian-pan-0.3/tasks/diffraction debian-pan-0.4/tasks/diffraction
--- debian-pan-0.3/tasks/diffraction 2021-02-28 14:43:03.000000000 +0100
+++ debian-pan-0.4/tasks/diffraction 2023-03-06 12:01:06.000000000 +0100
@@ -1,15 +1,50 @@
Format: https://blends.debian.org/blends/1.1
Task: diffraction
-Description: diffraction softwares suit
- This metapackage will install all diffraction softwares
+Description: diffraction software suit
+ This metapackage will install all X-ray photons-and-neutrons PAN diffraction
+ software
Comment: Improve the description
-Recommends: binoculars
+Recommends: binoculars, binoculars-doc, python3-binoculars
+
+Recommends: cif2hkl
+
+Recommends: debichem-crystallography
+
+Recommends: density-fitness
+
+Recommends: dioptas
+
+Recommends: fityk
+
+Recommends: gcrystal
+
+Recommends: ghkl, gir1.2-hkl-5.0, libhkl-dev, libhkl-doc
+
+Recommends: libccp4-data, libccp4-dev
+
+Recommends: libxy-bin, libxy-dev
+
+Recommends: objcryst-fox
+
+Recommends: pyfai, python3-pyfai, python-pyfai-doc
Recommends: python3-denss
+Recommends: python3-dials-data
+
+Recommends: python3-moviepy
+
Recommends: python3-xrayutilities, python-xrayutilities-doc
+Recommends: python3-pyxrd
+
+Recommends: python3-silx, python-silx-doc, silx
+
+Recommends: dioptas
+
+Recommends: libobjcryst, python3-pyobjcryst
+
Suggests: nebula
Homepage: https://github.com/Natnux/nebula
License: GPL-2+
@@ -17,3 +52,12 @@
an open tool for X-ray scientists to interactively reconstruct and
visualize diffuse scattering in three-dimensional reciprocal
space. Programmed in C++ using Qt, OpenCL, and OpenGL.
+
+Suggests: pynx
+Homepage: http://ftp.esrf.fr/pub/scisoft/PyNX/
+License: CeCILL License 2.1
+Pkg-Description: Python toolkit for accelerated Nano-structures Crystallography and Coherent X-ray Imaging techniques.
+ The software included in this package can be used for:
+ 1. the computing of X-ray scattering using graphical processing units
+ 2. X-ray wavefield propagation (from near to far field)
+ 3. simulation and GPU-accelerated analysis of experiments using the ptychography and coherent diffraction imaging techniques
diff -Nru debian-pan-0.3/tasks/gid debian-pan-0.4/tasks/gid
--- debian-pan-0.3/tasks/gid 2021-02-28 14:43:03.000000000 +0100
+++ debian-pan-0.4/tasks/gid 1970-01-01 01:00:00.000000000 +0100
@@ -1,43 +0,0 @@
-Format: https://blends.debian.org/blends/1.1
-Task: gid
-Description: Grazing incidence X-ray and neutron diffraction
- This metapackage will install all GID, GIXD, GIND, GISAS, GISAXS, GISANS software
-Comment: Improve the description
-
-Recommends: binoculars
-
-Recommends: python3-denss
-
-Recommends: python3-xrayutilities, python-xrayutilities-doc
-
-Suggest: x-socs
-Homepage: http://sourceforge.net/projects/xsocs/?source=directory
-License: LGPL-2+
-Pkg-Description: X-ray Strain Orientation Calculation Software
- The X-ray Strain Orientation Calculation Software (X-SOCS) is a
- user-friendly program, which has been developed at ID01 for automatic
- analysis of the spec-file and images recorded during continuous
- mapping measurements. X-SOCS aims at retrieving strain and tilt maps
- of nanostructures, films, surfaces or even embedded structures. It
- offers the opportunity to get preliminary results directly at the
- beamline giving the user the opportunity to adapt the planning of the
- experiments and the measurements with respect to this first set of
- results. This is of particular importance for the application of such
- fast scanning methods to in operando studies at high temperatures or
- in gas or liquid environments.
-
-Suggests: gsas
-Homepage: ftp://ftp.ncnr.nist.gov/pub/cryst/gsas/LINUX_gsas+expgui.tar.gz
-License: ?
-Pkg-Description: ?
-
-Suggests: isgisaxs
-Homepage: http://ln-www.insp.upmc.fr/axe4/Oxydes/IsGISAXS/isgisaxs.htm
-License: GPL3+
-Pkg-Description: gisaxs -- diffraction
-
-Suggests: fitgisaxs
-Homepage: http://lmp.sp2mi.univ-poitiers.fr/en/index.php?option=com_content&task=view&id=124&Itemid=42
-License: ?
-Comment: IgorPro software
-Pkg-Description: ?
diff -Nru debian-pan-0.3/tasks/grazing-incidence debian-pan-0.4/tasks/grazing-incidence
--- debian-pan-0.3/tasks/grazing-incidence 1970-01-01 01:00:00.000000000 +0100
+++ debian-pan-0.4/tasks/grazing-incidence 2023-03-06 12:01:06.000000000 +0100
@@ -0,0 +1,50 @@
+Format: https://blends.debian.org/blends/1.1
+Task: grazing-incidence
+Description: Grazing incidence X-ray photon and neutron diffraction
+ This metapackage will install all GID, GIXD, GIND, GISAS, GISAXS, GISANS
+ software
+Comment: Improve the description
+
+Recommends: binoculars
+
+Recommends: bornagain, bornagain-doc, python3-bornagain
+
+Recommends: python3-denss
+
+Recommends: python3-genx
+
+Recommends: python3-xrayutilities, python-xrayutilities-doc
+
+Recommends: python3-moviepy
+
+Suggest: x-socs
+Homepage: http://sourceforge.net/projects/xsocs/?source=directory
+License: LGPL-2+
+Pkg-Description: X-ray Strain Orientation Calculation Software
+ The X-ray Strain Orientation Calculation Software (X-SOCS) is a
+ user-friendly program, which has been developed at ID01 for automatic
+ analysis of the spec-file and images recorded during continuous
+ mapping measurements. X-SOCS aims at retrieving strain and tilt maps
+ of nanostructures, films, surfaces or even embedded structures. It
+ offers the opportunity to get preliminary results directly at the
+ beamline giving the user the opportunity to adapt the planning of the
+ experiments and the measurements with respect to this first set of
+ results. This is of particular importance for the application of such
+ fast scanning methods to in operando studies at high temperatures or
+ in gas or liquid environments.
+
+Suggests: gsas
+Homepage: ftp://ftp.ncnr.nist.gov/pub/cryst/gsas/LINUX_gsas+expgui.tar.gz
+License: ?
+Pkg-Description: ?
+
+Suggests: isgisaxs
+Homepage: http://ln-www.insp.upmc.fr/axe4/Oxydes/IsGISAXS/isgisaxs.htm
+License: GPL3+
+Pkg-Description: gisaxs -- diffraction
+
+Suggests: fitgisaxs
+Homepage: http://lmp.sp2mi.univ-poitiers.fr/en/index.php?option=com_content&task=view&id=124&Itemid=42
+License: ?
+Comment: IgorPro software
+Pkg-Description: ?
diff -Nru debian-pan-0.3/tasks/imaging debian-pan-0.4/tasks/imaging
--- debian-pan-0.3/tasks/imaging 1970-01-01 01:00:00.000000000 +0100
+++ debian-pan-0.4/tasks/imaging 2023-03-06 12:01:06.000000000 +0100
@@ -0,0 +1,116 @@
+Format: https://blends.debian.org/blends/1.1
+Task: imaging
+Description: imaging software
+ This metapackage will install all X-ray photons-and-neutrons PAN imaging
+ software
+Comment: Improve the description
+
+Recommends: 3depict
+
+Recommends: astro-frameworks
+
+Recommends: astro-gdl
+
+Recommends: astro-python3
+
+Recommends: astropy-utils
+
+Recommends: facet-analyser
+
+Recommends: g3data
+
+Recommends: giza-dev
+
+Recommends: gmsh
+
+Recommends: gnudatalanguage
+
+Recommends: gnuplot
+
+Recommends: gphoto2
+
+Recommends: grace
+
+Recommends: graphviz
+
+Recommends: gri
+
+Recommends: gwyddion
+
+Recommends: ifrit
+
+Recommends: imagej
+
+Recommends: imview
+
+Recommends: kst
+
+Recommends: mantis-xray
+
+Recommends: mayavi2
+
+Recommends: med-imaging
+
+Recommends: ovito
+
+Recommends: pdl
+
+Recommends: plotdrop
+
+Recommends: python3-aplpy
+
+Recommends: python3-astroml
+
+Recommends: python3-astroml-addons
+
+Recommends: python3-astropy, python3-fitsio
+
+Recommends: python3-cartopy
+
+Recommends: python3-cpl
+
+Recommends: python3-gammapy
+
+Recommends: python3-gdl
+
+Recommends: python3-gnuplot
+
+Recommends: python3-guiqwt
+
+Recommends: python3-hyperspy
+
+Recommends: python3-imexam
+
+Recommends: python3-moviepy
+
+Recommends: python3-olefile
+
+Recommends: python3-photutils
+
+Recommends: python3-pyqtgraph
+
+Recommends: python3-seaborn
+
+Recommends: python3-specutils
+
+Recommends: python3-wcsaxes
+
+Recommends: python3-willow
+
+Recommends: qtiplot
+
+Recommends: rasmol
+
+Recommends: relion
+
+Recommends: relion-cuda
+
+Recommends: relion-gui
+
+Recommends: relion-gui-cuda
+
+Recommends: sextractor
+
+Recommends: threeb, threeb-imagej
+
+Recommends: veusz
diff -Nru debian-pan-0.3/tasks/laue debian-pan-0.4/tasks/laue
--- debian-pan-0.3/tasks/laue 2021-02-28 14:43:03.000000000 +0100
+++ debian-pan-0.4/tasks/laue 2023-03-06 12:01:06.000000000 +0100
@@ -1,7 +1,7 @@
Format: https://blends.debian.org/blends/1.1
Task: laue
Description: laue software suit
- This metapackage will install all laue softwares
+ This metapackage will install all X-ray photons-and-neutrons PAN laue software
Comment: Improve the description
Suggests: esmeralda
diff -Nru debian-pan-0.3/tasks/machine-learning debian-pan-0.4/tasks/machine-learning
--- debian-pan-0.3/tasks/machine-learning 1970-01-01 01:00:00.000000000 +0100
+++ debian-pan-0.4/tasks/machine-learning 2023-03-06 12:01:06.000000000 +0100
@@ -0,0 +1,38 @@
+Format: https://blends.debian.org/blends/1.1
+Task: machine-learning
+Description: machine learning software
+ This metapackage will install all the machine learning software for
+ photons-and-neutrons PAN
+Comment: Improve the description
+
+Recommends: keras-doc, python3-keras, python3-keras-applications, python3-keras-preprocessing
+
+Recommends: libopencv-dnn4.5
+
+Recommends: libopencv-dnn-dev
+
+Recommends: libtorch-test
+
+Recommends: libtorch-thnn
+
+Recommends: python3-brian
+
+Recommends: python3-eagerpy
+
+Recommends: python3-lasagne
+
+Recommends: python3-mdp
+
+Recommends: python3-onnx
+
+Recommends: python3-onnxlibxnnpack-dev
+
+Recommends: python3-pyclustering
+
+Recommends: python3-skorch
+
+Recommends: python3-torch
+
+Recommends: python3-torch-ignite
+
+Recommends: python3-tpot, python-tpot-doc
diff -Nru debian-pan-0.3/tasks/microscopy debian-pan-0.4/tasks/microscopy
--- debian-pan-0.3/tasks/microscopy 2021-02-28 14:43:03.000000000 +0100
+++ debian-pan-0.4/tasks/microscopy 1970-01-01 01:00:00.000000000 +0100
@@ -1,9 +0,0 @@
-Format: https://blends.debian.org/blends/1.1
-Task: microscopy
-Description: microscopy IR
- This metapackage will install all microscopy softwares
-Comment: Improve the description
-
-Recommends: gwyddion
-
-Suggests: threeb
diff -Nru debian-pan-0.3/tasks/modelling debian-pan-0.4/tasks/modelling
--- debian-pan-0.3/tasks/modelling 1970-01-01 01:00:00.000000000 +0100
+++ debian-pan-0.4/tasks/modelling 2023-03-06 12:01:06.000000000 +0100
@@ -0,0 +1,36 @@
+Format: https://blends.debian.org/blends/1.1
+Task: modelling
+Description: modeling software
+ This metapackage will install all modelling software for X-ray
+ photons-and-neutrons PAN
+Comment: Improve the description
+
+Recommends: debichem-analytical-biochemistry
+
+Recommends: debichem-cheminformatics
+
+Recommends: debichem-development
+
+Recommends: debichem-input-generation-output-processing
+
+Recommends: debichem-molecular-abinitio
+
+Recommends: debichem-molecular-dynamics
+
+Recommends: debichem-molecular-modelling
+
+Recommends: debichem-periodic-abinitio
+
+Recommends: debichem-semiempirical
+
+Recommends: debichem-visualisation
+
+Recommends: python3-phonopy
+
+Recommends: mcstas-tools-python-mcgui, mcpl, mcstas, mcstas-comps, libncrystal-bin
+
+Recommends: mcxtrace-tools-python-mcgui, mcpl, mcxtrace, mcxtrace-comps, libncrystal-bin
+
+Recommends: mumax3
+
+Recommends: python3-xrt
diff -Nru debian-pan-0.3/tasks/mx debian-pan-0.4/tasks/mx
--- debian-pan-0.3/tasks/mx 2021-02-28 14:43:03.000000000 +0100
+++ debian-pan-0.4/tasks/mx 2023-03-06 12:01:06.000000000 +0100
@@ -1,9 +1,18 @@
Format: https://blends.debian.org/blends/1.1
Task: mx
Description: Macro Molecular diffraction
- This metapackage will install all MX diffraction softwares.
+ This metapackage will install all MX diffraction software for X-ray
+ photons-and-neutrons PAN.
Comment: Improve the description
+Recommends: python3-mrcfile
+
+Recommends: python3-cctbx
+
+Recommends: python3-dials-data
+
+Recommends: python3-extra-data
+
Suggests: coot
WNPP: 531904
Homepage: http://biop.ox.ac.uk/coot/
@@ -850,12 +859,6 @@
Recommends: povray
-Suggests: powder
-Homepage: ?
-License: ?
-Pkg-Description: ?
-Comment: ?
-
Suggests: promotif
Homepage: ?
License: ?
diff -Nru debian-pan-0.3/tasks/powder debian-pan-0.4/tasks/powder
--- debian-pan-0.3/tasks/powder 2021-02-28 14:43:03.000000000 +0100
+++ debian-pan-0.4/tasks/powder 2023-03-06 12:01:06.000000000 +0100
@@ -1,9 +1,13 @@
Format: https://blends.debian.org/blends/1.1
Task: powder
Description: powder diffraction
- This metapackage will install all powder diffraction softwares.
+ This metapackage will install all X-ray photons-and-neutrons PAN powder
+ diffraction software.
Comment: Improve the description
+
+Recommends: dioptas
+
Recommends: fityk
Recommends: libxy-bin
@@ -12,6 +16,8 @@
Recommends: pyfai
+Recommends: python3-pyxrd
+
Recommends: spd
Suggests: fullprof
diff -Nru debian-pan-0.3/tasks/small-angle-scattering debian-pan-0.4/tasks/small-angle-scattering
--- debian-pan-0.3/tasks/small-angle-scattering 2021-02-28 14:43:03.000000000 +0100
+++ debian-pan-0.4/tasks/small-angle-scattering 2023-03-06 12:01:06.000000000 +0100
@@ -1,17 +1,27 @@
Format: https://blends.debian.org/blends/1.1
Task: small-angle-scattering
Description: small angle scattering
- This metapackage will install all PAN Blend small angle scattering
- packages.
+ This metapackage will install all X-ray photons-and-neutrons PAN Blend
+ small angle scattering packages.
Comment: improve the description
-Recommends: python3-denss
+Recommends: dioptas
Recommends: fityk
Recommends: pyfai
-Recommends: sasview
+Recommends: python3-bioxtasraw
+
+Recommends: python3-denss
+
+Recommends: python3-freesas
+
+Recommends: python3-sasmodels, python-sasmodels-doc
+
+Recommends: python3-sasview, sasview, sasview-doc
+
+Recommends: sasmodels-private-libs
Recommends: spd
diff -Nru debian-pan-0.3/tasks/spectroscopy debian-pan-0.4/tasks/spectroscopy
--- debian-pan-0.3/tasks/spectroscopy 2021-02-28 14:43:03.000000000 +0100
+++ debian-pan-0.4/tasks/spectroscopy 2023-03-06 12:01:06.000000000 +0100
@@ -1,12 +1,35 @@
Format: https://blends.debian.org/blends/1.1
Task: spectroscopy
Description: X-Rays and Neutron spectroscopy
- This metapackage will install all spectroscopy packages.
+ This metapackage will install all X-ray photons-and-neutrons PAN spectroscopy
+ packages (XPS, ARPES, IXS, ...).
+
+Recommends: dmrgpp
+
+Recommends: etsf-io
+
+Recommends: mantis-xray
+
+Recommends: navarp
+
+Recommends: pymca
Recommends: python3-arpys
Recommends: python3-igor
+Recommends: python3-phonopy
+
+Recommends: python3-pyimagetool
+
+Recommends: python3-pymatgen
+
+Recommends: python3-spectral
+
+Recommends: python3-xrstools
+
+Recommends: spview
+
Suggests: arpys
Homepage: https://github.com/kuadrat/arpys
License: GPL3v+
@@ -17,78 +40,16 @@
License: MIT
Pkg-Description: data processing routines for multidimensional photoemission spectroscopy (MPES)
-Suggest: drmgpp
-Homepage: https://github.com/g1257/dmrgpp
-Pkg-Description: drmgpp software suite
-License: drmgpp
- Copyright (c) 2009-2014, 2020, 2021, UT-Battelle, LLC
- All rights reserved
- .
- [DMRG++, Version 3]
- [by G.A., Oak Ridge National Laboratory]
- [by Ed D'Azevedo, Oak Ridge National Laboratory]
- .
- UT Battelle Open Source Software License 11242008
- .
- OPEN SOURCE LICENSE
- .
- Subject to the conditions of this License, each
- contributor to this software hereby grants, free of
- charge, to any person obtaining a copy of this software
- and associated documentation files (the "Software"), a
- perpetual, worldwide, non-exclusive, no-charge,
- royalty-free, irrevocable copyright license to use, copy,
- modify, merge, publish, distribute, and/or sublicense
- copies of the Software.
- .
- 1. Redistributions of Software must retain the above
- copyright and license notices, this list of conditions,
- and the following disclaimer. Changes or modifications
- to, or derivative works of, the Software should be noted
- with comments and the contributor and organization's
- name.
- .
- 2. Neither the names of UT-Battelle, LLC or the
- Department of Energy nor the names of the Software
- contributors may be used to endorse or promote products
- derived from this software without specific prior written
- permission of UT-Battelle.
- .
- 3. The software and the end-user documentation included
- with the redistribution, with or without modification,
- must include the following acknowledgment:
- .
- "This product includes software produced by UT-Battelle,
- LLC under Contract No. DE-AC05-00OR22725 with the
- Department of Energy."
- .
- *********************************************************
- DISCLAIMER
- .
- THE SOFTWARE IS SUPPLIED BY THE COPYRIGHT HOLDERS AND
- CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED
- WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
- WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A
- PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE
- COPYRIGHT OWNER, CONTRIBUTORS, UNITED STATES GOVERNMENT,
- OR THE UNITED STATES DEPARTMENT OF ENERGY BE LIABLE FOR
- ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
- CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
- PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
- DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
- CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
- OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
- SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
- .
- NEITHER THE UNITED STATES GOVERNMENT, NOR THE UNITED
- STATES DEPARTMENT OF ENERGY, NOR THE COPYRIGHT OWNER, NOR
- ANY OF THEIR EMPLOYEES, REPRESENTS THAT THE USE OF ANY
- INFORMATION, DATA, APPARATUS, PRODUCT, OR PROCESS
- DISCLOSED WOULD NOT INFRINGE PRIVATELY OWNED RIGHTS.
-
Suggest: arpes
Homepage: https://github.com/chstan/arpes
Pkg-Description: Analysis of angle-resolved photoemission spectroscopy (ARPES).
License: GPLv3
+
+Suggest: rixs
+Homepage: internal SEXTANTS's beamline repository in Synchrotron SOLEIL
+License: ?
+Pkg-Description: Sorting and visualization of 1D spectra: XAS, scan positions, etc. (Detailed specifications sent to S. Bac in April 2020)
+ Visualization of contextual data (energy and polarization of the line, resolution, sample and spectrometer positions)
+ Processing of CCD images to extract RIXS spectra: application of thresholds, extraction of the curvature (by Gaussian fit) necessary to sum the
+ CCD lines after linear interpolation.
+ Visualization of the RIXS spectra and construction of RIXS maps in two representations: Emission Energy and Energy Loss.
diff -Nru debian-pan-0.3/tasks/tomography debian-pan-0.4/tasks/tomography
--- debian-pan-0.3/tasks/tomography 2021-02-28 14:43:03.000000000 +0100
+++ debian-pan-0.4/tasks/tomography 2023-03-06 12:01:06.000000000 +0100
@@ -1,27 +1,45 @@
Format: https://blends.debian.org/blends/1.1
Task: tomography
-Description: PAN Blend tomography
- This metapackage will install all PAN Blend tomography packages.
+Description: Photons and Neutrons (PAN) Blend tomography
+ This metapackage will install all X-ray photons-and-neutrons PAN Blend
+ tomography packages.
Comment: improve the Description
-Recommends: libufo-bin
+Recommends: ctsim, ctsim-doc, ctsim-help
+
+Recommends: facet-analyser
+
+Recommends: geomview
+
+Recommends: gir1.2-ufo-1.0, ufo-core-doc
Recommends: mayavi2
-Recommends: paraview
+Recommends: meshio-tools
+
+Recommends: meshlab
+
+Recommends: octave-astra-toolbox, python3-astra-toolbox
+
+Recommends: paraview, paraview-dev, paraview-doc
+
+Recommends: plastimatch
+
+Recommends: python3-freeart
+
+Recommends: python3-pyhst2-cuda
+
+Recommends: python3-paraview
Recommends: python3-skimage
-Recommends: ufo-filters
+Recommends: python3-tomogui
-Suggests: octave-astra-toolbox, python3-astra-toolbox
+Recommends: python3-tomopy
-Suggests: python3-pyhst2-cuda
+Recommends: rheolef
-Suggests: freeart
-Homepage: https://forge.epn-campus.eu/projects/freeart
-License: LGPL
-Pkg-Description: SART reconstruction algorithm
+Recommends: ufo-filters, ufo-filters-doc
Suggests: imagej-pluggins-tomo
Homepage: https://www.cells.es/Members/cpascual/files/public/scisoft_files/imagej-tomo-plugins/at_download
@@ -45,9 +63,30 @@
Pkg-Description: gather all information from the user that can be
provided prior to the tomography experiment.
-Suggests: tomopy
+Recommends: tomopy
Homepage: https://github.com/tomopy/tomopy
License: BSD-3
Pkg-Description: tomographic data processing and image reconstruction toolbox
TomoPy is a Python toolbox to perform tomographic data processing and
image reconstruction tasks at the Advanced Photon Sourc
+
+Suggests: tomodata
+Homepage: http://confluence.synchrotron-soleil.fr/display/ANATOMIX/tomodata.py+documentation
+License: ?
+Pkg-Description: conversion of files from nexus to edf, parameterization, reconstruction
+
+Recommends: dioptas
+Homepage: https://github.com/Dioptas/Dioptas
+License: GPL-3.0 License
+Pkg-Description: Dioptas is a Python-based program for on-the-fly data processing and exploration of two-dimensional X-ray diffraction area
+ detector data. It is specifically designed for the large amount of data collected at XRD beamlines at synchrotrons.
+
+Suggests: tomogui
+Homepage: https://pypi.org/project/tomogui/
+License: MIT
+Pkg-Description: Tomogui offers a Graphical User Interface to run tomographic reconstruction based on freeart and silx.
+
+Suggests: tomoj
+Homepage: https://sourceforge.net/projects/tomoj/
+License: GPL-3.0 License
+Pkg-Description: TomoJ is an ImageJ plug-in for tomographic reconstruction.
diff -Nru debian-pan-0.3/tasks/xas debian-pan-0.4/tasks/xas
--- debian-pan-0.3/tasks/xas 2021-02-28 14:43:03.000000000 +0100
+++ debian-pan-0.4/tasks/xas 2023-03-06 12:01:06.000000000 +0100
@@ -1,13 +1,22 @@
Format: https://blends.debian.org/blends/1.1
Task: xas
Description: EXAFS and XANES
- This metapackage will install all EXAFS and XANES packages.
+ This metapackage will install all X-ray photons-and-neutrons PAN EXAFS and
+ XANES absorption spectroscopy packages.
Comment: Improve the description
+Recommends: feff85
+
+Recommends: ifeffit
+
+Recommends: horae
+
Depends: pymca
Depends: quantum-espresso
+Recommends: python3-xraylarch
+
Suggests: xraylarch
Homepage: http://xraypy.github.io/xraylarch/
Vcs-Browser: https://salsa.debian.org/science-team/xraylarch
@@ -51,3 +60,12 @@
Homepage: http://code.google.com/p/prestopronto
License: GPL3+
Pkg-Description: Software for analysis of Quick Exafs data
+
+Suggest: rixs
+Homepage: internal SEXTANTS's beamline repository in Synchrotron SOLEIL
+License: ?
+Pkg-Description: Sorting and visualization of 1D spectra: XAS, scan positions, etc. (Detailed specifications sent to S. Bac in April 2020)
+ Visualization of contextual data (energy and polarization of the line, resolution, sample and spectrometer positions)
+ Processing of CCD images to extract RIXS spectra: application of thresholds, extraction of the curvature (by Gaussian fit) necessary to sum the
+ CCD lines after linear interpolation.
+ Visualization of the RIXS spectra and construction of RIXS maps in two representations: Emission Energy and Energy Loss.
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