[Debichem-devel] Bug#980711: gpaw: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.9 --test-pytest "--test-args=-v -m ci" returned exit code 13

[Lucas Nussbaum]

Source: gpaw
Version: 20.10.0-2
Severity: serious
Justification: FTBFS on amd64
Tags: bullseye sid ftbfs
Usertags: ftbfs-20210120 ftbfs-bullseye

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.

Relevant part (hopefully):
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> dh_auto_test -- --test-pytest --test-args="-v -m ci"
> I: pybuild base:232: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build; python3.9 -m pytest -v -m ci
> ============================= test session starts ==============================
> platform linux -- Python 3.9.1+, pytest-6.0.2, py-1.10.0, pluggy-0.13.0 -- /usr/bin/python3.9
> cachedir: .pytest_cache
> rootdir: /<<PKGBUILDDIR>>, configfile: pytest.ini
> collecting ... collected 0 items / 1 error
> 
> ==================================== ERRORS ====================================
> ________________________ ERROR collecting test session _________________________
> /usr/lib/python3.9/importlib/__init__.py:127: in import_module
>     return _bootstrap._gcd_import(name[level:], package, level)
> <frozen importlib._bootstrap>:1030: in _gcd_import
>     ???
> <frozen importlib._bootstrap>:1007: in _find_and_load
>     ???
> <frozen importlib._bootstrap>:972: in _find_and_load_unlocked
>     ???
> <frozen importlib._bootstrap>:228: in _call_with_frames_removed
>     ???
> <frozen importlib._bootstrap>:1030: in _gcd_import
>     ???
> <frozen importlib._bootstrap>:1007: in _find_and_load
>     ???
> <frozen importlib._bootstrap>:972: in _find_and_load_unlocked
>     ???
> <frozen importlib._bootstrap>:228: in _call_with_frames_removed
>     ???
> <frozen importlib._bootstrap>:1030: in _gcd_import
>     ???
> <frozen importlib._bootstrap>:1007: in _find_and_load
>     ???
> <frozen importlib._bootstrap>:986: in _find_and_load_unlocked
>     ???
> <frozen importlib._bootstrap>:680: in _load_unlocked
>     ???
> <frozen importlib._bootstrap_external>:790: in exec_module
>     ???
> <frozen importlib._bootstrap>:228: in _call_with_frames_removed
>     ???
> gpaw/__init__.py:35: in <module>
>     from ase.cli.run import str2dict
> gpaw/broadcast_imports.py:77: in load_module
>     return self.load_from_cache(fullname)
> gpaw/broadcast_imports.py:87: in load_from_cache
>     exec(code, module.__dict__)
> /usr/lib/python3/dist-packages/ase/cli/run.py:9: in <module>
>     from ase.eos import EquationOfState
> gpaw/broadcast_imports.py:77: in load_module
>     return self.load_from_cache(fullname)
> gpaw/broadcast_imports.py:87: in load_from_cache
>     exec(code, module.__dict__)
> /usr/lib/python3/dist-packages/ase/eos.py:7: in <module>
>     from scipy.optimize import curve_fit
> gpaw/broadcast_imports.py:77: in load_module
>     return self.load_from_cache(fullname)
> gpaw/broadcast_imports.py:87: in load_from_cache
>     exec(code, module.__dict__)
> /usr/lib/python3/dist-packages/scipy/optimize/__init__.py:413: in <module>
>     from ._linprog import linprog, linprog_verbose_callback
> gpaw/broadcast_imports.py:77: in load_module
>     return self.load_from_cache(fullname)
> gpaw/broadcast_imports.py:87: in load_from_cache
>     exec(code, module.__dict__)
> /usr/lib/python3/dist-packages/scipy/optimize/_linprog.py:25: in <module>
>     from ._linprog_highs import _linprog_highs
> gpaw/broadcast_imports.py:77: in load_module
>     return self.load_from_cache(fullname)
> gpaw/broadcast_imports.py:87: in load_from_cache
>     exec(code, module.__dict__)
> /usr/lib/python3/dist-packages/scipy/optimize/_linprog_highs.py:20: in <module>
>     from ._highs.highs_wrapper import highs_wrapper
> gpaw/broadcast_imports.py:109: in find_spec
>     raise ImportError
> E   ImportError
> =========================== short test summary info ============================
> ERROR ../../.. - ImportError
> !!!!!!!!!!!!!!!!!!!! Interrupted: 1 error during collection !!!!!!!!!!!!!!!!!!!!
> =============================== 1 error in 0.58s ===============================
> E: pybuild pybuild:353: test: plugin distutils failed with: exit code=2: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build; python3.9 -m pytest -v -m ci
> dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.9 --test-pytest "--test-args=-v -m ci" returned exit code 13

The full build log is available from:
   http://qa-logs.debian.net/2021/01/20/gpaw_20.10.0-2_unstable.log

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with me
so that we can identify if something relevant changed in the meantime.

About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.