[Neurodebian-users] Condor parallel problem

[Michael Hanke]

On Mon, Aug 13, 2012 at 11:06:15AM -0500, Eduardo Garza wrote:
> Dear all,
> 
> Thanks for the great tutorial Parallelizing FSL, however I have a problem.
> I did all the steps and exported the variable before running fsl but it's
> not working. I'm using Ubuntu 12.04 LTS 64 bit. Condor was easily
> installed, and the exported variable is showing in env.
> Do I have to redirect Condor? fsl.sh is not on /etc/fsl/fsl.sh but in
> /etc/fsl/4.1/fsl.sh.

If you install the 'fsl' package, in addition to 'fsl-4.1' you'll have
that link as well, but you can also just source the versioned config
file directly with no side-effects.

> Do I need to change anything in fsl.sh? Like the FSLPARALLEL=1?

FSLPARALLEL should be set to 'condor'.

Is that the case?

Michael

-- 
Michael Hanke
http://mih.voxindeserto.de