[Neurodebian-users] FSL parallelization with condor

[Michael Hanke]

Hey,

You're the second user to report this. Sadly, the first one vanished. Could
you provide my with a smallish dataset and a commandline call to reproduce
the problem? That would help me a lot to track this down.

Thanks,

Michael
On Mar 27, 2012 9:45 PM, "Antti Korvenoja" <antti.korvenoja at helsinki.fi>
wrote:

> Hi!
>
> I'm probably having problems with condor configuration. I set up a
> personal (single host, multicore) configuration with debconf on Debian
> wheezy. When I run FSL analysis (FEAT or MELODIC) with
> FSLPARALLEL=condor the processing does not progress beyond submitting
> jobs (fsl_sub calls). I can see condor processes are running but none of
> the FSL subprograms (e.g. flirt) are running. No error output is
> generated on fsl log. The analysis job does not progress. With
> FSLPARALLEL=0 the same job is finished without problems (sadly using
> only one core).
>
> Any ideas what might be wrong? Does the grid-engine package need to be
> installed as well?
>
> Thank you,
>
> Antti
>
>
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