[Neurodebian-users] FSL parallelization with condor

[Antti Korvenoja]

Hello Michael,

Unfortunately the modification you suggested does not fix the problem. 
fsl-seltest feat runs fine. FSLPARALLEL=condor fsl-selftest feat shows
no progress and cpu usage remains at baseline.

Antti

ke, 2012-03-28 kello 21:12 +0200, Michael Hanke kirjoitti:
> On Tue, Mar 27, 2012 at 10:45:39PM +0300, Antti Korvenoja wrote:
> > Any ideas what might be wrong? Does the grid-engine package need to be
> > installed as well?
> 
> No. I think I found the problem. Please look into /etc/condor/config.d/00debconf
> locate the lines for CONDOR_HOST and ALLOW_WRITE and change them to:
> 
> CONDOR_HOST = 127.0.0.1
> ALLOW_WRITE = 127.0.0.1
> 
> Please let me know if that fixes it for you, and I will update the
> package ASAP.
> 
> I also updated the fsl-feeds suite to be compatible with condor-based
> cluster computing. With fsl-feeds >= 4.1.9-1 you can do:
> 
> % FSLPARALLEL=condor fsl-selftest feat
> 
> to verify if things are working properly.
> 
> Please let me know....
> 
> Michael
>