[pymvpa] searchlight demo clarification

Dornisch, John john.dornisch at scra.org
Fri Dec 5 13:15:20 UTC 2008


A list of some of the software installed for the PyMVPA.

ii  python-matplotlib                          0.91.2-0ubuntu1
Python based plotting system in a style simi
ii  python-matplotlib-data                     0.91.2-0ubuntu1
Python based plotting system (data package)
ii  python-mvpa                                0.4.0-1~hardy.apsy1
multivariate pattern analysis with Python
ii  python-nifti                               0.20081017.1-1~hardy.apsy1
Python interface to the NIfTI I/O libraries
ii  python-hcluster                            0.1.8-1~hardy.apsy1
Python functions for agglomerative clusterin
ii  python-imaging                             1.1.6-1ubuntu5
Python Imaging Library


Thanks
John Dornisch (Sys admin for this researcher)


On 12/5/08 12:53 AM, "Michael Hanke" <michael.hanke at gmail.com> wrote:

> Hi,
> 
> On Thu, Dec 04, 2008 at 04:09:23PM -0500, Mark Eckert wrote:
>> > Hi,
>> >
>> > I have been playing with the demo dataset and the searchlight tutorial
>> > (searchlight_2d page).  It looks like the graphical output that was
>> > generated is missing information (please see attached).   I ran the example
>> > code in a .py file and no errors or warnings were generated.  Am I missing
>> > related software that was not part of the Debian/Ubuntu package that was
>> > installed on a Ubuntu i386 8.04 machine?  What should I expect to see in >>
the
>> > plot?
> You should see brain slices with the searchlight stats (see attached
> figure I have generated on my system minutes ago). If there were no
> errors you should have all require software install -- but maybe your
> matplotlib is buggy. Can you please tell me what version of PyMVPA and
> matplotlib you are running?
> 
> 
> Thanks,
> 
> Michael
> 
> --
> GPG key:  1024D/3144BE0F Michael Hanke
> http://apsy.gse.uni-magdeburg.de/hanke
> ICQ: 48230050
> 

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