[pymvpa] Pkg-ExpPsy-PyMVPA Digest, Vol 34, Issue 14

nitish goyal nitishgoyal.nsit at gmail.com
Tue Dec 28 13:15:12 UTC 2010


after installing swig i got this error

root at nitish-laptop:~/PyMVPA# python2 setup.py build_ext
running build_ext
running build_src
building extension "mvpa.clfs.libsmlrc.smlrc" sources
building extension "mvpa.clfs.libsvmc._svmc" sources
building data_files sources
customize UnixCCompiler
customize UnixCCompiler using build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
building 'mvpa.clfs.libsmlrc.smlrc' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall
-Wstrict-prototypes -fPIC

compile options: '-I/usr/lib/python2.6/dist-packages/numpy/core/include
-I/usr/include/python2.6 -c'
gcc: mvpa/clfs/libsmlrc/smlr.c
mvpa/clfs/libsmlrc/smlr.c:10:20: error: Python.h: No such file or directory
mvpa/clfs/libsmlrc/smlr.c:13: warning: return type defaults to ‘int’
mvpa/clfs/libsmlrc/smlr.c: In function ‘DL_EXPORT’:
mvpa/clfs/libsmlrc/smlr.c:13: error: expected declaration specifiers before
‘stepwise_regression’
mvpa/clfs/libsmlrc/smlr.c:241: error: expected declaration specifiers before
‘PyMODINIT_FUNC’
mvpa/clfs/libsmlrc/smlr.c:12: error: parameter name omitted
mvpa/clfs/libsmlrc/smlr.c:244: error: expected ‘{’ at end of input
mvpa/clfs/libsmlrc/smlr.c:10:20: error: Python.h: No such file or directory
mvpa/clfs/libsmlrc/smlr.c:13: warning: return type defaults to ‘int’
mvpa/clfs/libsmlrc/smlr.c: In function ‘DL_EXPORT’:
mvpa/clfs/libsmlrc/smlr.c:13: error: expected declaration specifiers before
‘stepwise_regression’
mvpa/clfs/libsmlrc/smlr.c:241: error: expected declaration specifiers before
‘PyMODINIT_FUNC’
mvpa/clfs/libsmlrc/smlr.c:12: error: parameter name omitted
mvpa/clfs/libsmlrc/smlr.c:244: error: expected ‘{’ at end of input
error: Command "gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2
-Wall -Wstrict-prototypes -fPIC
-I/usr/lib/python2.6/dist-packages/numpy/core/include
-I/usr/include/python2.6 -c mvpa/clfs/libsmlrc/smlr.c -o
build/temp.linux-i686-2.6/mvpa/clfs/libsmlrc/smlr.o" failed with exit status
1

On Tue, Dec 28, 2010 at 5:45 PM, <
pkg-exppsy-pymvpa-request at lists.alioth.debian.org> wrote:

> Send Pkg-ExpPsy-PyMVPA mailing list submissions to
>        pkg-exppsy-pymvpa at lists.alioth.debian.org
>
> To subscribe or unsubscribe via the World Wide Web, visit
>        http://lists.alioth.debian.org/mailman/listinfo/pkg-exppsy-pymvpa
> or, via email, send a message with subject or body 'help' to
>        pkg-exppsy-pymvpa-request at lists.alioth.debian.org
>
> You can reach the person managing the list at
>        pkg-exppsy-pymvpa-owner at lists.alioth.debian.org
>
> When replying, please edit your Subject line so it is more specific
> than "Re: Contents of Pkg-ExpPsy-PyMVPA digest..."
>
>
> Today's Topics:
>
>   1. Re: Help Related Pymvpa (Yaroslav Halchenko)
>   2. problem in buiding package from source (nitish goyal)
>   3. Re: problem in buiding package from source (Emanuele Olivetti)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Mon, 27 Dec 2010 10:26:44 -0500
> From: Yaroslav Halchenko <debian at onerussian.com>
> Subject: Re: [pymvpa] Help Related Pymvpa
> To: pkg-exppsy-pymvpa at lists.alioth.debian.org
> Message-ID: <20101227152644.GR15030 at onerussian.com>
> Content-Type: text/plain; charset=us-ascii
>
>
> On Mon, 27 Dec 2010, Emanuele Olivetti wrote:
> > You are warmly invited to install the latest PyMVPA v0.6.0-dev. If you
> are
> > running a debian or ubuntu machine you can add the NeuroDebian repository
> > following instructions here:
> >     http://neuro.debian.net/
> > and then get it via [0]:
> >     sudo apt-get install python-mvpa-snapshot
> we are yet to package 0.6.0.dev, the package on neuro debian has only
> 0.5.0.dev+783+gde39-1~squeeze.nd1
>
> thus please just follow instructions for installation from GIT/source
> atm:
>
> http://dev.pymvpa.org/installation.html#buildfromsource
>
>
> > Alternatively you can install it from sources on whatever OS:
> >     https://github.com/PyMVPA/PyMVPA
>
> > See related posts to here:
> >
> http://lists.alioth.debian.org/pipermail/pkg-exppsy-pymvpa/2010q4/001296.html
> >
> http://lists.alioth.debian.org/pipermail/pkg-exppsy-pymvpa/2010q4/001328.html
>
> > Best,
>
> > Emanuele
> --
> =------------------------------------------------------------------=
> Keep in touch                                     www.onerussian.com
> Yaroslav Halchenko                 www.ohloh.net/accounts/yarikoptic
>
>
>
> ------------------------------
>
> Message: 2
> Date: Tue, 28 Dec 2010 12:33:04 +0530
> From: nitish goyal <nitishgoyal.nsit at gmail.com>
> Subject: [pymvpa] problem in buiding package from source
> To: pkg-exppsy-pymvpa at lists.alioth.debian.org
> Message-ID:
>        <AANLkTikvrRuTP4rbhTOD9UcAZf+0yp-91UQoU1i4URAR at mail.gmail.com<AANLkTikvrRuTP4rbhTOD9UcAZf%2B0yp-91UQoU1i4URAR at mail.gmail.com>
> >
> Content-Type: text/plain; charset="iso-8859-1"
>
> While installing pymvpa from source, I got this error
> i have ubuntu 10.04 and python 2.6
> I had used the first command *python setup.py build_ext*
> and got this error.Please help me.
>
> running build_ext
> running build_src
> building extension "mvpa.clfs.libsmlrc.smlrc" sources
> building extension "mvpa.clfs.libsvmc._svmc" sources
> creating build
> creating build/src.linux-i686-2.6
> creating build/src.linux-i686-2.6/mvpa
> creating build/src.linux-i686-2.6/mvpa/clfs
> creating build/src.linux-i686-2.6/mvpa/clfs/libsvmc
> swig++: mvpa/clfs/libsvmc/svmc.i
> swig -python -c++ -I/usr/include/numpy -I3rd/libsvm -o
> build/src.linux-i686-2.6/mvpa/clfs/libsvmc/svmc_wrap.cpp -outdir
> build/src.linux-i686-2.6/mvpa/clfs/libsvmc mvpa/clfs/libsvmc/svmc.i
> unable to execute swig: No such file or directory
> error: command 'swig' failed with exit status 1
>
>
> On Mon, Dec 27, 2010 at 5:45 PM, <
> pkg-exppsy-pymvpa-request at lists.alioth.debian.org> wrote:
>
> > Send Pkg-ExpPsy-PyMVPA mailing list submissions to
> >        pkg-exppsy-pymvpa at lists.alioth.debian.org
> >
> > To subscribe or unsubscribe via the World Wide Web, visit
> >        http://lists.alioth.debian.org/mailman/listinfo/pkg-exppsy-pymvpa
> > or, via email, send a message with subject or body 'help' to
> >        pkg-exppsy-pymvpa-request at lists.alioth.debian.org
> >
> > You can reach the person managing the list at
> >        pkg-exppsy-pymvpa-owner at lists.alioth.debian.org
> >
> > When replying, please edit your Subject line so it is more specific
> > than "Re: Contents of Pkg-ExpPsy-PyMVPA digest..."
> >
> >
> > Today's Topics:
> >
> >   1. Help Related Pymvpa (nitish goyal)
> >   2. Re: Help Related Pymvpa (Emanuele Olivetti)
> >
> >
> > ----------------------------------------------------------------------
> >
> > Message: 1
> > Date: Sun, 26 Dec 2010 21:57:26 +0530
> > From: nitish goyal <nitishgoyal.nsit at gmail.com>
> > Subject: [pymvpa] Help Related Pymvpa
> > To: pkg-exppsy-pymvpa at lists.alioth.debian.org
> > Message-ID:
> >        <AANLkTimBBHRYaLfdU+1-yeiX=bBg+bhhe=n3Ln=9Gqx- at mail.gmail.com>
> > Content-Type: text/plain; charset="iso-8859-1"
> >
> > Hello,
> >          I am a B.tech student of computer science at NSIT. I had just
> > started using the pymvpa, but the methods like fmri_dataset() are not
> > working with my pymvpa 0.4. But i found these tutorials very promising in
> > order to study fmri Data. So Tell me if there are any tutorial like this
> > for
> > the previous version Or tell me where i would found the pymvpa 0.6.
> > Please reply soon.
> > Because i have to complete it during these winter vacation's.
> >
> > --
> > Regards,
> > Nitish Goyal
> > Undergraduate Student Of NSIT,
> > Computer Science (B.E.)
> > Asst. PlaceComm 2012
> > contact me:- 09999605824
> > Reply at :-  nitishgoyal.nsit at gmail.com
> > -------------- next part --------------
> > An HTML attachment was scrubbed...
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> >
> http://lists.alioth.debian.org/pipermail/pkg-exppsy-pymvpa/attachments/20101226/bba67594/attachment-0001.htm
> > >
> >
> > ------------------------------
> >
> > Message: 2
> > Date: Mon, 27 Dec 2010 10:40:12 +0100
> > From: Emanuele Olivetti <emanuele at relativita.com>
> > Subject: Re: [pymvpa] Help Related Pymvpa
> > To: Development and support of PyMVPA
> >        <pkg-exppsy-pymvpa at lists.alioth.debian.org>
> > Message-ID: <4D185EFC.6020609 at relativita.com>
> > Content-Type: text/plain; charset=ISO-8859-1; format=flowed
> >
> > On 12/26/2010 05:27 PM, nitish goyal wrote:
> > > Hello,
> > >           I am a B.tech student of computer science at NSIT. I had just
> > started using
> > > the pymvpa, but the methods like fmri_dataset() are not working with my
> > pymvpa 0.4. But
> > > i found these tutorials very promising in order to study fmri Data. So
> > Tell me if there
> > > are any tutorial like this for the previous version Or tell me where i
> > would found the
> > > pymvpa 0.6.
> >
> > Hi Nitish,
> >
> > fmri_dataset() was introduced in PyMVPA v0.5.0-dev and is available from
> > that version on. See:
> > http://dev.pymvpa.org/generated/mvpa.datasets.mri.fmri_dataset.html
> >
> > You are warmly invited to install the latest PyMVPA v0.6.0-dev. If you
> are
> > running a debian or ubuntu machine you can add the NeuroDebian repository
> > following instructions here:
> >     http://neuro.debian.net/
> > and then get it via [0]:
> >     sudo apt-get install python-mvpa-snapshot
> > Alternatively you can install it from sources on whatever OS:
> >     https://github.com/PyMVPA/PyMVPA
> >
> > See related posts to here:
> >
> >
> http://lists.alioth.debian.org/pipermail/pkg-exppsy-pymvpa/2010q4/001296.html
> >
> >
> http://lists.alioth.debian.org/pipermail/pkg-exppsy-pymvpa/2010q4/001328.html
> >
> > Best,
> >
> > Emanuele
> >
> > [0]: Note that the python-mvpa-snapshot package is not available for all
> > versions of ubuntu/debian (e.g., not for ubuntu 10.04):
> >     http://neuro.debian.net/pkgs/python-mvpa-snapshot.html
> >
> >
> >
> >
> > ------------------------------
> >
> > _______________________________________________
> > Pkg-ExpPsy-PyMVPA mailing list
> > Pkg-ExpPsy-PyMVPA at lists.alioth.debian.org
> > http://lists.alioth.debian.org/mailman/listinfo/pkg-exppsy-pymvpa
> >
> >
> > End of Pkg-ExpPsy-PyMVPA Digest, Vol 34, Issue 13
> > *************************************************
> >
>
>
>
> --
> Regards,
> Nitish Goyal
> Undergraduate Student Of NSIT,
> Computer Science (B.E.)
> Asst. PlaceComm 2012
> contact me:- 09999605824
> Reply at :-  nitishgoyal.nsit at gmail.com
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>
> ------------------------------
>
> Message: 3
> Date: Tue, 28 Dec 2010 09:50:31 +0100
> From: Emanuele Olivetti <emanuele at relativita.com>
> Subject: Re: [pymvpa] problem in buiding package from source
> To: Development and support of PyMVPA
>        <pkg-exppsy-pymvpa at lists.alioth.debian.org>
> Message-ID: <4D19A4D7.1000801 at relativita.com>
> Content-Type: text/plain; charset="iso-8859-1"; Format="flowed"
>
> On 12/28/2010 08:03 AM, nitish goyal wrote:
> > While installing pymvpa from source, I got this error
> > i have ubuntu 10.04 and python 2.6
> > I had used the first command *python setup.py build_ext*
> > and got this error.Please help me.
> >
> ...
> > swig++: mvpa/clfs/libsvmc/svmc.i
> > swig -python -c++ -I/usr/include/numpy -I3rd/libsvm -o
> > build/src.linux-i686-2.6/mvpa/clfs/libsvmc/svmc_wrap.cpp -outdir
> > build/src.linux-i686-2.6/mvpa/clfs/libsvmc mvpa/clfs/libsvmc/svmc.i
> > unable to execute swig: No such file or directory
> > error: command 'swig' failed with exit status 1
> >
>
> Hi Nitish. You need to install swig in order to build the libsvm wrapper.
> On debian/ubuntu:
>     sudo apt-get install swig
> See for example doc/source/installation.srt within the source code tree.
>
> Best,
>
> Emanuele
>
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> ------------------------------
>
> _______________________________________________
> Pkg-ExpPsy-PyMVPA mailing list
> Pkg-ExpPsy-PyMVPA at lists.alioth.debian.org
> http://lists.alioth.debian.org/mailman/listinfo/pkg-exppsy-pymvpa
>
>
> End of Pkg-ExpPsy-PyMVPA Digest, Vol 34, Issue 14
> *************************************************
>



-- 
Regards,
Nitish Goyal
Undergraduate Student Of NSIT,
Computer Science (B.E.)
Asst. PlaceComm 2012
contact me:- 09999605824
Reply at :-  nitishgoyal.nsit at gmail.com
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