[pymvpa] error py26-pywavelets installation on snow leopard Mac

[John Magnotti]

So I tracked the compile issue a bit---Looks the issue is a redefinition of
svm_model in svmc_wrap.cpp that was already located in svm.h. All I
did was comment out the definition in svmc_wrap.cpp so it would use
the one from svm.h.

Is that a reasonable fix?


I've run at least the start_easy example:

and get:

Aventurine:examples jmagnotti$ python start_easy.py
/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/mvpa/base/verbosity.py:19:
DeprecationWarning: the sets module is deprecated
  from sets import Set
Warning: divide by zero encountered in power
...(lots of these divide by zero warnings)
Warning: invalid value encountered in _cdf_single_call (vectorized)


Error for 12-fold cross-validation on 2-class problem: 0.055556


John

On Thu, Jan 27, 2011 at 2:02 PM, James Kyle <krunk7+pymvpa at gmail.com> wrote:
> Ah, good. The current version of libsvm in macports is 3.0.
>
> -james
> On Jan 27, 2011, at 11:35 AM, Yaroslav Halchenko wrote:
>
>>
>> On Thu, 27 Jan 2011, James Kyle wrote:
>>
>>> Lastly, I cannot find the libsvm verbosity patch for the life of
>>> me. I've trolled the debian package repository and googled to no avail.
>>> However, I'm not exceptionally familiar with the deb package management
>>> system so may be missing something obvious.
>>
>> IIRC for libsvm 3.0 it is not necessary (is that the one you have in
>> macports? I've removed your log too quickly where I saw 3.0 version of
>> it)
>>
>> --
>> =------------------------------------------------------------------=
>> Keep in touch                                     www.onerussian.com
>> Yaroslav Halchenko                 www.ohloh.net/accounts/yarikoptic
>>
>> _______________________________________________
>> Pkg-ExpPsy-PyMVPA mailing list
>> Pkg-ExpPsy-PyMVPA at lists.alioth.debian.org
>> http://lists.alioth.debian.org/mailman/listinfo/pkg-exppsy-pymvpa
>
>
> _______________________________________________
> Pkg-ExpPsy-PyMVPA mailing list
> Pkg-ExpPsy-PyMVPA at lists.alioth.debian.org
> http://lists.alioth.debian.org/mailman/listinfo/pkg-exppsy-pymvpa
>