[pymvpa] (no subject)

[Daniel Agger]

Dear pymvpa helper
 
Im trying to install pymvpa and i start the tutorial, and i run into this problem.It says nibabel not found,and it requires external nibabel but i have nibabel in my path. so i don't what to do, please help.
 
regards
Dan
 
>>> ds = get_haxby2001_data()
Traceback (most recent call last):
  File "<pyshell#28>", line 1, in <module>
    ds = get_haxby2001_data()
  File "C:\Python25\tutorial_lib.py", line 44, in get_haxby2001_data
    ds = get_raw_haxby2001_data(roi=roi)
  File "C:\Python25\tutorial_lib.py", line 39, in get_raw_haxby2001_data
    return load_datadb_demo_blockfmri(path=path, roi=roi)
  File "C:\Python25\lib\site-packages\mvpa\misc\data_generators.py", line 355, in load_datadb_tutorial_data
    from mvpa.datasets.mri import fmri_dataset
  File "C:\Python25\lib\site-packages\mvpa\datasets\mri.py", line 22, in <module>
    externals.exists('nibabel', raise_=True)
  File "C:\Python25\lib\site-packages\mvpa\base\externals.py", line 523, in exists
    raise RuntimeError, "Required external '%s' was not found" % dep
RuntimeError: Required external 'nibabel' was not found
 
 
PyMVPA:
 Version:       0.6.0~rc1
 Hash:          feda3f526efd71a5ae34f0c1fd3d8f2334d5f412
 Path:          C:\Python25\lib\site-packages\mvpa\__init__.pyc
 Version control (GIT):
 GIT information could not be obtained due "C:\Python25\lib\site-packages\mvpa\.. is not under GIT"
SYSTEM:
 OS:            nt Windows Vista 6.1.7600
 Distribution:  
EXTERNALS:
 Present:       cPickle, ctypes, good scipy.stats.rdist, good scipy.stats.rv_discrete.ppf, griddata, gzip, matplotlib, numpy, pylab, pylab plottable, scipy
 Absent:        atlas_fsl, atlas_pymvpa, elasticnet, glmnet, h5py, hcluster, lars, libsvm, libsvm verbosity control, lxml, mass, mdp, mdp ge 2.4, nibabel, nipy, nose, openopt, pprocess, pywt, pywt wp reconstruct, pywt wp reconstruct fixed, reportlab, rpy2, running ipython env, sg ge 0.6.4, sg ge 0.6.5, sg_fixedcachesize, shogun, shogun.krr, shogun.lightsvm, shogun.mpd, shogun.svmocas, shogun.svrlight, skl, weave
 Versions of critical externals:
  scipy       : 0.7.1rc1
  numpy       : 1.3.0
  matplotlib  : 1.0.1
  ctypes      : 1.0.3
  matplotlib  : 1.0.1
  nifti       : failed to query due to "nifti is not a known dependency key."
  numpy       : 1.3.0
 Matplotlib backend: TkAgg
RUNTIME:
 PyMVPA Environment Variables:
   PyMVPA Runtime Configuration:
  [externals]
  have griddata = yes
  have pprocess = no
  have good scipy.stats.rdist = yes
  have pylab plottable = yes
  have pywt wp reconstruct = no
  have pywt = no
  have lxml = no
  have running ipython env = no
  have nibabel = no
  have ctypes = yes
  have sg_fixedcachesize = no
  have elasticnet = no
  have shogun.mpd = no
  have matplotlib = yes
  have pywt wp reconstruct fixed = no
  have scipy = yes
  have reportlab = no
  have openopt = no
  have libsvm = no
  have nose = no
  have weave = no
  have atlas_fsl = no
  have h5py = no
  have hcluster = no
  have sg ge 0.6.4 = no
  have sg ge 0.6.5 = no
  have good scipy.stats.rv_discrete.ppf = yes
  have skl = no
  have mdp ge 2.4 = no
  have shogun.svrlight = no
  have lars = no
  have shogun.svmocas = no
  have nipy = no
  have glmnet = no
  have mass = no
  have shogun = no
  have libsvm verbosity control = no
  have shogun.krr = no
  have atlas_pymvpa = no
  have cpickle = yes
  have mdp = no
  have numpy = yes
  have pylab = yes
  have rpy2 = no
  have shogun.lightsvm = no
  have gzip = yes
 
 
 
  		 	   		  
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