[pymvpa] minor bug ?

[josef.pktd at gmail.com]

On Wed, Apr 27, 2011 at 10:45 AM, Yaroslav Halchenko
<debian at onerussian.com> wrote:
> On Wed, 27 Apr 2011, josef.pktd at gmail.com wrote:
>> You can just temporarily turn off the warnings in the test, if you add
>> test for corner cases.
>> That's how Ralf silenced the scipy test suite.
>
> and we silence our tests ;-) but apparently not externals checks
>
>> If there are print statements, then it would be a bug in scipy, but
>> these look like "Warnings" where you have control over what happens to
>> them.
>
> Ha -- poking in my eyes works at times!  Thanks Josef!
>
> Apparently it is indeed numpy warnings so np.seterr(all="ignore") was
> effective!
>
> BUT scipy does use straight printouts of warnings, and that is what made me
> believe that it was one of them:

BUT scipy.stats is not on your list :)

Josef

>
>
> $> dpkg -L python-scipy | grep '\.py' | xargs grep -i "print.*warn" | head
> /usr/share/pyshared/scipy/signal/signaltools.py:        print "Warning: imaginary part of x ignored."
> /usr/share/pyshared/scipy/signal/signaltools.py:        print "Warning: imaginary part of x ignored."
> /usr/share/pyshared/scipy/signal/filter_design.py:        print "Warning, order is zero...check input parametegstop."
> /usr/share/pyshared/scipy/interpolate/fitpack.py:                if quiet<2:print 'Warning: Setting x[%d][%d]=x[%d][0]'%(i,m,i)
> /usr/share/pyshared/scipy/interpolate/fitpack.py:            print "Warning: "+_iermess[ier][0]
> /usr/share/pyshared/scipy/interpolate/fitpack.py:            print "Warning: "+_iermess[ier][0]
> /usr/share/pyshared/scipy/interpolate/fitpack.py:            print "Warning: the number of zeros exceeds mest"
> /usr/share/pyshared/scipy/interpolate/fitpack.py:            print "Warning: "+_iermess2[ierm][0]
> /usr/share/pyshared/scipy/integrate/quadpack.py:            print "Warning: " + msg
> /usr/share/pyshared/scipy/maxentropy/maxentutils.py:#    print "Warning: could not load the fast FORTRAN library for logsumexp()."
>
>
> (git)novo:~/proj/scipy[tags/v0.9.0]git
> $> git grep -i 'print .*Warning:'
> scipy/integrate/quadpack.py:            print "Warning: " + msg
> scipy/interpolate/fitpack.py:                if quiet<2:print 'Warning: Setting x[%d][%d]=x[%d][0]'%(i,m,i)
> scipy/interpolate/fitpack.py:            print "Warning: "+_iermess[ier][0]
> scipy/interpolate/fitpack.py:            print "Warning: "+_iermess[ier][0]
> scipy/interpolate/fitpack.py:            print "Warning: the number of zeros exceeds mest"
> scipy/interpolate/fitpack.py:            print "Warning: "+_iermess2[ierm][0]
> scipy/maxentropy/maxentutils.py:#    print "Warning: could not load the fast FORTRAN library for logsumexp()."
> scipy/maxentropy/maxentutils.py:        print "Warning: OverflowError using numpy.exp(). Using slower Python"\
> scipy/optimize/anneal.py:                print "Warning: Cooled to %f at %s but this is not" \
> scipy/optimize/anneal.py:            print "Warning: Maximum number of iterations exceeded."
> scipy/optimize/optimize.py:            print "Warning: Maximum number of function evaluations has "\
> scipy/optimize/optimize.py:            print "Warning: Maximum number of iterations has been exceeded"
> scipy/optimize/optimize.py:            print "Warning: Desired error not necessarily achieved" \
> scipy/optimize/optimize.py:            print "Warning: Maximum number of iterations has been exceeded"
> scipy/optimize/optimize.py:            print "Warning: Desired error not necessarily achieved due to precision loss"
> scipy/optimize/optimize.py:            print "Warning: Maximum number of iterations has been exceeded"
> scipy/optimize/optimize.py:            print "Warning: Maximum number of iterations has been exceeded"
> scipy/optimize/optimize.py:            print "Warning: Maximum number of function evaluations has "\
> scipy/optimize/optimize.py:            print "Warning: Maximum number of iterations has been exceeded"
> scipy/optimize/optimize.py:            print "Warning: Final optimization did not succeed"
> scipy/signal/signaltools.py:        print "Warning: imaginary part of x ignored."
> scipy/signal/signaltools.py:        print "Warning: imaginary part of x ignored."
> scipy/sparse/linalg/dsolve/umfpack/umfpack.py:                    print 'warning: singular matrix'
> scipy/sparse/linalg/dsolve/umfpack/umfpack.py:                    print 'warning: recomputing symbolic'
> scipy/sparse/linalg/dsolve/umfpack/umfpack.py:            print 'warning: (almost) singular matrix! '\
> scipy/weave/blitz_tools.py:            print 'warning: compilation failed. Executing as python code'
> scipy/weave/build_tools.py:        #print "warning: build directory was not part of python path."\
> scipy/weave/build_tools.py:        print "warning: specified temp_dir '%s' does not exist " \
> scipy/weave/build_tools.py:            print "warning:, neither the module's directory nor the "\
> scipy/weave/build_tools.py:            print 'WARNING: failed to build import library for gcc. Linking will fail.'
> scipy/weave/catalog.py:        print 'warning: default directory is not write accessible.'
> scipy/weave/catalog.py:        print 'warning: default directory is not write accessible.'
> scipy/weave/catalog.py:            print 'warning: unable to repair catalog entry\n %s\n in\n %s' % \
> scipy/weave/swig2_spec.py:            print "WARNING: Multiple SWIG versions detected.  No version was"
>
>
>
> --
> =------------------------------------------------------------------=
> Keep in touch                                     www.onerussian.com
> Yaroslav Halchenko                 www.ohloh.net/accounts/yarikoptic
>
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