[pymvpa] PyMVPA 2.0.1 is out
Yaroslav Halchenko
debian at onerussian.com
Wed Mar 28 00:38:15 UTC 2012
Dear PyMVPA-ers,
We are glad to announce the availability of a minor but long awaited
2.0.1 bugfix release of PyMVPA.
Sources:
Tagged and pushed to http://github.com/PyMVPA/PyMVPA
Tarballs available from https://github.com/PyMVPA/PyMVPA/tags
Debian/Ubuntu:
2.0.1 is available from the http://neuro.debian.net
and was uploaded to Debian unstable (i.e. sid)
Windows
installer is available for Python 2.6 at
https://github.com/PyMVPA/PyMVPA/downloads
[although once again -- we recommend Windows/OSX users to have a
look at http://neuro.debian.net/vm.html]
Hopefully soon http://www.lfd.uci.edu/~gohlke/pythonlibs collection by
Christoph Gohlke would get 2.0.1 as well
Website: updated
And here is what would you are getting with the upgrade:
* 2.0.1 (Tue, Mar 27 2012)
Primarily a bugfix release
* Fixes (21 BF commits)
- hdf5 storage -- handle loading of objects with bound
builtin_function_or_method
- use system-wide autosummary/generate.py for sphinx >= 1.1.2
(Closes: #658593)
- ConditionalAttribute should not loose value in deepcopy
when default off (Fixes #63)
- correct handling of scalar mean/std values for ZScoreMapper
- MRI data import via _img2data now works with unicode
filenames (Fixes #60)
- should work with IPython >= 0.11 now (Fixes #59)
- various small fixes to improve tests and functionality
- fix SMLR segfaults on Windows (Thanks cgohlke for the patch)
* Enhancements (29 ENH, OPT, and NF commits)
- FxMapper calls functions natively (instead of a slow
row/column at a time) if they carry axis as the 2nd argument.
Provides tremendous speed up for mean_sample etc.
- xrandom_unique_combinations generator for random unique
combinations
- dual_gaussian made more robust by not handling negative
values for the standard deviations
- dual_positive_gaussian
- expose "sensitivities" for PLR
- NFoldSplitter float option for cvtype and
intelligent behavior on 'random' limited by 'count' given a
large number of folds
- few additional learners from sklearn to the warehouses:
ExtraTrees, RandomForest, LassoLarsIC
- __repr__ for Partitioners
- new performance metric -- F1 score -- in the confusion matrix
summary stats
- CachedQueryEngine does not rely now on id but on the
exact value of the query parameters (converted to hashable
types). Before it could behave incorrectly on rare occasions.
* API changes
- deprecating .splitattr if favor of .attr in
Partitioner
Enjoy!
--
=------------------------------------------------------------------=
Yaroslav O. Halchenko
Postdoctoral Fellow, Department of Psychological and Brain Sciences
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
Phone: +1 (603) 646-9834 Fax: +1 (603) 646-1419
WWW: http://www.linkedin.com/in/yarik
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