[pymvpa] Tutorial data: did something change?
Shane Hoversten
shanusmagnus at gmail.com
Tue Jul 1 05:57:43 UTC 2014
Howdy -
I'm trying to walk someone through the early part of the PyMVPA tutorial.
We installed the latest PyMVPA 2.31 via macports; (the last time I did it
it was v.2.2.0) and the directory names seem to have changed, s.t. the real
tutorial data is in
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/mvpa2/data/tutorial_data_25mm/data
which I think is different from where it used to be? Anyway, the
documentation here:
http://www.pymvpa.org/tutorial_datasets.html
describes mask_vt.nii.gz as containing 577 features, but from what I can
tell it's only got a single active voxel. Check it out:
❯❯❯ for file in *.nii.gz; do
echo "for $file ==> " $(3dBrickStat -positive -count $file)
done
for anat.nii.gz ==> 352
for bold.nii.gz ==> 871200
for bold_mean.nii.gz ==> 600
for mask_brain.nii.gz ==> 129
for mask_gray.nii.gz ==> 28
for mask_hoc.nii.gz ==> 45
for mask_vt.nii.gz ==> 1
for mask_white.nii.gz ==> 34
There's other data in the .../mvpa2/data/ directory, but the bold data is
of different dimension, the mask is of different dimension and also a
different name. Am I missing something obvious, or are the dox and the
PyMVPA distribution out of sync now?
S
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